Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 AF186192.3-201ENST00000583427 947 ntBASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TM9SF3Q9HD45 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.89■□□□□ 0.78
TM9SF3Q9HD45 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
TM9SF3Q9HD45 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
TM9SF3Q9HD45 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 AP003071.4-201ENST00000562276 1284 ntBASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
TM9SF3Q9HD45 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 AC097493.4-201ENST00000641197 219 ntBASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
TM9SF3Q9HD45 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 AL355355.2-201ENST00000442321 338 ntBASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.87■□□□□ 0.77
TM9SF3Q9HD45 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms