Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 AC096733.2-201ENST00000609937 1394 ntBASIC30.08■■■□□ 2.41
SCAPERQ9BY12 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
SCAPERQ9BY12 CD70-202ENST00000423145 881 ntTSL 2 BASIC30.08■■■□□ 2.41
SCAPERQ9BY12 FAM207BP-201ENST00000447172 505 ntBASIC30.08■■■□□ 2.41
SCAPERQ9BY12 AC130371.2-201ENST00000619443 611 ntBASIC30.08■■■□□ 2.41
SCAPERQ9BY12 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC30.08■■■□□ 2.41
SCAPERQ9BY12 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
SCAPERQ9BY12 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC30.08■■■□□ 2.41
SCAPERQ9BY12 KRT8P17-201ENST00000453110 1448 ntBASIC30.08■■■□□ 2.41
SCAPERQ9BY12 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC30.07■■■□□ 2.4
SCAPERQ9BY12 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC30.07■■■□□ 2.4
SCAPERQ9BY12 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC30.07■■■□□ 2.4
SCAPERQ9BY12 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
SCAPERQ9BY12 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SCAPERQ9BY12 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC30.07■■■□□ 2.4
SCAPERQ9BY12 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC30.07■■■□□ 2.4
SCAPERQ9BY12 AL121956.5-201ENST00000625261 221 ntBASIC30.07■■■□□ 2.4
SCAPERQ9BY12 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SCAPERQ9BY12 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SCAPERQ9BY12 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SCAPERQ9BY12 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
SCAPERQ9BY12 BET1L-202ENST00000332865 533 ntTSL 5 BASIC30.06■■■□□ 2.4
SCAPERQ9BY12 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC30.06■■■□□ 2.4
SCAPERQ9BY12 PCED1CP-201ENST00000419887 785 ntBASIC30.06■■■□□ 2.4
SCAPERQ9BY12 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SCAPERQ9BY12 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC30.06■■■□□ 2.4
SCAPERQ9BY12 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC30.06■■■□□ 2.4
SCAPERQ9BY12 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
SCAPERQ9BY12 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
SCAPERQ9BY12 AC116351.2-201ENST00000606540 1585 ntBASIC30.06■■■□□ 2.4
SCAPERQ9BY12 GALC-202ENST00000393568 2054 ntTSL 2 BASIC30.06■■■□□ 2.4
SCAPERQ9BY12 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 COX11P1-201ENST00000489116 835 ntBASIC30.05■■■□□ 2.4
SCAPERQ9BY12 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 AC116562.4-202ENST00000641738 218 ntBASIC30.05■■■□□ 2.4
SCAPERQ9BY12 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 GUSBP5-202ENST00000510805 1989 ntBASIC30.05■■■□□ 2.4
SCAPERQ9BY12 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 MFAP1P1-201ENST00000442257 1255 ntBASIC30.05■■■□□ 2.4
SCAPERQ9BY12 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 CD320-202ENST00000537716 1119 ntTSL 2 BASIC30.05■■■□□ 2.4
SCAPERQ9BY12 AC011298.2-201ENST00000617989 482 ntBASIC30.05■■■□□ 2.4
SCAPERQ9BY12 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC30.04■■■□□ 2.4
SCAPERQ9BY12 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SCAPERQ9BY12 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
SCAPERQ9BY12 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
SCAPERQ9BY12 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC30.04■■■□□ 2.4
SCAPERQ9BY12 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
SCAPERQ9BY12 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC30.04■■■□□ 2.4
SCAPERQ9BY12 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC30.04■■■□□ 2.4
SCAPERQ9BY12 AC092647.4-201ENST00000457211 535 ntBASIC30.04■■■□□ 2.4
SCAPERQ9BY12 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC30.04■■■□□ 2.4
SCAPERQ9BY12 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC30.04■■■□□ 2.4
SCAPERQ9BY12 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SCAPERQ9BY12 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC30.03■■■□□ 2.4
SCAPERQ9BY12 TFP1-202ENST00000475455 1573 ntBASIC30.03■■■□□ 2.4
SCAPERQ9BY12 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC30.03■■■□□ 2.4
SCAPERQ9BY12 AC007663.1-201ENST00000438948 1240 ntBASIC30.03■■■□□ 2.4
SCAPERQ9BY12 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC30.03■■■□□ 2.4
SCAPERQ9BY12 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
SCAPERQ9BY12 GPX4-207ENST00000589115 812 ntTSL 2 BASIC30.03■■■□□ 2.4
SCAPERQ9BY12 CYGB-204ENST00000589342 815 ntTSL 3 BASIC30.03■■■□□ 2.4
SCAPERQ9BY12 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC30.03■■■□□ 2.4
SCAPERQ9BY12 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC30.03■■■□□ 2.4
SCAPERQ9BY12 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC30.03■■■□□ 2.4
SCAPERQ9BY12 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC30.02■■■□□ 2.4
SCAPERQ9BY12 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
SCAPERQ9BY12 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SCAPERQ9BY12 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
SCAPERQ9BY12 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC30.02■■■□□ 2.4
SCAPERQ9BY12 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SCAPERQ9BY12 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
SCAPERQ9BY12 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
SCAPERQ9BY12 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
SCAPERQ9BY12 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SCAPERQ9BY12 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC30.02■■■□□ 2.4
SCAPERQ9BY12 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
SCAPERQ9BY12 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC30.01■■■□□ 2.39
SCAPERQ9BY12 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC30.01■■■□□ 2.39
SCAPERQ9BY12 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
SCAPERQ9BY12 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC30.01■■■□□ 2.39
SCAPERQ9BY12 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC30.01■■■□□ 2.39
SCAPERQ9BY12 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC30.01■■■□□ 2.39
SCAPERQ9BY12 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC30.01■■■□□ 2.39
SCAPERQ9BY12 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC30.01■■■□□ 2.39
SCAPERQ9BY12 AC010653.2-201ENST00000623505 997 ntBASIC30.01■■■□□ 2.39
SCAPERQ9BY12 AC141257.4-201ENST00000634557 245 ntBASIC30.01■■■□□ 2.39
SCAPERQ9BY12 AC136944.6-201ENST00000634818 245 ntBASIC30.01■■■□□ 2.39
SCAPERQ9BY12 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC30.01■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms