Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 AC011498.5-201ENST00000592027 486 ntBASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 RCC2P6-201ENST00000526625 1557 ntBASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 URGCP-206ENST00000446958 365 ntTSL 2 BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 AP001005.1-201ENST00000571755 1248 ntBASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.34■□□□□ 0.85
COL25A1Q9BXS0 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 MIR940-201ENST00000401276 94 ntBASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC20.33■□□□□ 0.85
COL25A1Q9BXS0 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL25A1Q9BXS0 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL25A1Q9BXS0 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL25A1Q9BXS0 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
COL25A1Q9BXS0 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.33■□□□□ 0.84
COL25A1Q9BXS0 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.33■□□□□ 0.84
COL25A1Q9BXS0 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.33■□□□□ 0.84
COL25A1Q9BXS0 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 AP000523.1-201ENST00000398242 1049 ntBASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 RASA4DP-201ENST00000460726 1199 ntBASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 RNA5SP419-201ENST00000515908 135 ntBASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 PGAM5P1-201ENST00000518923 814 ntBASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 TPSP2-201ENST00000561760 610 ntBASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 AC106730.1-201ENST00000566722 1090 ntBASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.32■□□□□ 0.84
COL25A1Q9BXS0 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 HBZP1-201ENST00000354915 429 ntBASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 AC098831.1-202ENST00000438821 336 ntBASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 GCSHP2-201ENST00000560971 527 ntBASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL25A1Q9BXS0 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms