Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.91■□□□□ 0.78
VPS39Q96JC1 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
VPS39Q96JC1 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS39Q96JC1 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.91■□□□□ 0.78
VPS39Q96JC1 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS39Q96JC1 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VPS39Q96JC1 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS39Q96JC1 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.91■□□□□ 0.78
VPS39Q96JC1 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS39Q96JC1 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
VPS39Q96JC1 AC026271.2-201ENST00000428091 497 ntBASIC19.91■□□□□ 0.78
VPS39Q96JC1 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.91■□□□□ 0.78
VPS39Q96JC1 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS39Q96JC1 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS39Q96JC1 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.91■□□□□ 0.78
VPS39Q96JC1 AC008694.1-202ENST00000636953 945 ntBASIC19.91■□□□□ 0.78
VPS39Q96JC1 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS39Q96JC1 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS39Q96JC1 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS39Q96JC1 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
VPS39Q96JC1 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
VPS39Q96JC1 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS39Q96JC1 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
VPS39Q96JC1 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS39Q96JC1 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
VPS39Q96JC1 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.9■□□□□ 0.78
VPS39Q96JC1 AC069236.1-201ENST00000604339 616 ntBASIC19.9■□□□□ 0.78
VPS39Q96JC1 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.9■□□□□ 0.78
VPS39Q96JC1 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS39Q96JC1 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
VPS39Q96JC1 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS39Q96JC1 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.78
VPS39Q96JC1 AC138932.1-201ENST00000534164 6830 ntBASIC19.89■□□□□ 0.78
VPS39Q96JC1 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS39Q96JC1 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS39Q96JC1 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS39Q96JC1 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS39Q96JC1 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS39Q96JC1 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS39Q96JC1 KRT18P68-201ENST00000392293 1000 ntBASIC19.89■□□□□ 0.77
VPS39Q96JC1 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS39Q96JC1 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS39Q96JC1 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS39Q96JC1 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
VPS39Q96JC1 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.89■□□□□ 0.77
VPS39Q96JC1 CYP2T1P-201ENST00000432607 1285 ntBASIC19.89■□□□□ 0.77
VPS39Q96JC1 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS39Q96JC1 KRT8P17-201ENST00000453110 1448 ntBASIC19.89■□□□□ 0.77
VPS39Q96JC1 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS39Q96JC1 BID-214ENST00000617586 542 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS39Q96JC1 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS39Q96JC1 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS39Q96JC1 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS39Q96JC1 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS39Q96JC1 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS39Q96JC1 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VPS39Q96JC1 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS39Q96JC1 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS39Q96JC1 TREX1-205ENST00000625293 1783 ntBASIC19.88■□□□□ 0.77
VPS39Q96JC1 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS39Q96JC1 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS39Q96JC1 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
VPS39Q96JC1 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS39Q96JC1 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS39Q96JC1 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS39Q96JC1 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS39Q96JC1 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS39Q96JC1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS39Q96JC1 AC231657.2-201ENST00000624556 255 ntBASIC19.88■□□□□ 0.77
VPS39Q96JC1 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS39Q96JC1 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
VPS39Q96JC1 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS39Q96JC1 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS39Q96JC1 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS39Q96JC1 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.87■□□□□ 0.77
VPS39Q96JC1 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS39Q96JC1 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
VPS39Q96JC1 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS39Q96JC1 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS39Q96JC1 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS39Q96JC1 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS39Q96JC1 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS39Q96JC1 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
VPS39Q96JC1 AL031963.3-201ENST00000606441 850 ntBASIC19.87■□□□□ 0.77
VPS39Q96JC1 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS39Q96JC1 MIR5787-201ENST00000611784 55 ntBASIC19.87■□□□□ 0.77
VPS39Q96JC1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms