Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 VOPP1-217ENST00000625836 1400 ntTSL 2 BASIC17.06■□□□□ 0.325e-7■■■■□ 23.1
UPF1Q92900 VOPP1-206ENST00000428097 1671 ntTSL 3 BASIC16.94■□□□□ 0.35e-7■■■■□ 23.1
UPF1Q92900 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.13■□□□□ 0.175e-7■■■■□ 23.1
UPF1Q92900 VOPP1-208ENST00000433959 2900 ntTSL 2 BASIC11.21□□□□□ -0.625e-7■■■■□ 23.1
UPF1Q92900 AC119674.2-202ENST00000641109 1675 ntAPPRIS ALT217.58■□□□□ 0.46e-7■■■■□ 23.1
UPF1Q92900 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.216e-7■■■■□ 23.1
UPF1Q92900 AC119674.2-203ENST00000642129 1675 ntAPPRIS P5 BASIC14.44□□□□□ -0.16e-7■■■■□ 23.1
UPF1Q92900 AC119674.2-201ENST00000641494 879 ntAPPRIS ALT210.63□□□□□ -0.716e-7■■■■□ 23.1
UPF1Q92900 ARIH2-201ENST00000356401 4933 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.752e-6■■■■□ 23.1
UPF1Q92900 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.325e-10■■■■□ 23.1
UPF1Q92900 TMOD1-202ENST00000375175 2516 ntTSL 2 BASIC13.03□□□□□ -0.325e-10■■■■□ 23.1
UPF1Q92900 TMOD1-203ENST00000395211 3259 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.945e-10■■■■□ 23.1
UPF1Q92900 ATG9A-208ENST00000429920 733 ntTSL 516.29■□□□□ 0.26e-8■■■■□ 23
UPF1Q92900 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.336e-7■■■■□ 23
UPF1Q92900 SNAI1-201ENST00000244050 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.241e-7■■■■□ 23
UPF1Q92900 RAB11FIP3-203ENST00000434585 3550 ntAPPRIS ALT2 TSL 512.38□□□□□ -0.431e-6■■■■□ 23
UPF1Q92900 RAB11FIP3-205ENST00000450428 3203 ntTSL 2 BASIC12.22□□□□□ -0.451e-6■■■■□ 23
UPF1Q92900 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.438e-9■■■■□ 23
UPF1Q92900 NXN-206ENST00000571684 1159 ntTSL 328.27■■■□□ 2.128e-7■■■■□ 23
UPF1Q92900 NXN-202ENST00000537628 1340 ntTSL 3 BASIC27.39■■□□□ 1.978e-7■■■■□ 23
UPF1Q92900 STX5-203ENST00000394690 1568 ntTSL 5 BASIC25.87■■□□□ 1.738e-7■■■■□ 23
UPF1Q92900 STX5-208ENST00000492066 1627 ntTSL 524.81■■□□□ 1.568e-7■■■■□ 23
UPF1Q92900 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.518e-7■■■■□ 23
UPF1Q92900 STX5-207ENST00000491231 1719 ntTSL 524.23■■□□□ 1.478e-7■■■■□ 23
UPF1Q92900 NXN-204ENST00000571281 1047 ntTSL 1 (best)24.09■■□□□ 1.458e-7■■■■□ 23
UPF1Q92900 ITPA-204ENST00000460550 967 ntTSL 223.64■■□□□ 1.378e-7■■■■□ 23
UPF1Q92900 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.368e-7■■■■□ 23
UPF1Q92900 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC23.28■■□□□ 1.328e-7■■■■□ 23
UPF1Q92900 ITPA-208ENST00000483354 1028 ntTSL 323.28■■□□□ 1.328e-7■■■■□ 23
UPF1Q92900 ITPA-209ENST00000490838 977 ntTSL 223.06■■□□□ 1.288e-7■■■■□ 23
UPF1Q92900 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC22.45■■□□□ 1.198e-7■■■■□ 23
UPF1Q92900 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.188e-7■■■■□ 23
UPF1Q92900 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.178e-7■■■■□ 23
UPF1Q92900 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC22.38■■□□□ 1.178e-7■■■■□ 23
UPF1Q92900 ITPA-207ENST00000472295 670 ntTSL 222.38■■□□□ 1.178e-7■■■■□ 23
UPF1Q92900 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.92■□□□□ 0.788e-7■■■■□ 23
UPF1Q92900 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC18.63■□□□□ 0.578e-7■■■■□ 23
UPF1Q92900 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.17■□□□□ 0.58e-7■■■■□ 23
UPF1Q92900 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.9■□□□□ 0.468e-7■■■■□ 23
UPF1Q92900 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.398e-7■■■■□ 23
UPF1Q92900 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.72■□□□□ 0.278e-7■■■■□ 23
UPF1Q92900 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.68■□□□□ 0.268e-7■■■■□ 23
UPF1Q92900 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.28e-7■■■■□ 23
UPF1Q92900 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.118e-7■■■■□ 23
UPF1Q92900 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.063e-8■■■■□ 23
UPF1Q92900 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.7□□□□□ -0.068e-7■■■■□ 23
UPF1Q92900 MTG2-206ENST00000467101 2814 ntTSL 1 (best)13.85□□□□□ -0.198e-7■■■■□ 23
UPF1Q92900 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.28e-7■■■■□ 23
UPF1Q92900 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC13.54□□□□□ -0.242e-24■■■■□ 23
UPF1Q92900 RMI2-202ENST00000572173 1865 ntTSL 1 (best) BASIC13.46□□□□□ -0.268e-7■■■■□ 23
UPF1Q92900 MGST2-206ENST00000515137 1013 ntTSL 1 (best)13.1□□□□□ -0.318e-7■■■■□ 23
UPF1Q92900 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.343e-8■■■■□ 23
UPF1Q92900 FURIN-201ENST00000268171 4244 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.373e-8■■■■□ 23
UPF1Q92900 EIF4G1-221ENST00000441154 4311 ntTSL 5 BASIC12.3□□□□□ -0.442e-24■■■■□ 23
UPF1Q92900 TBC1D16-202ENST00000340848 4244 ntTSL 1 (best) BASIC12.07□□□□□ -0.488e-7■■■■□ 23
UPF1Q92900 SHANK2-218ENST00000601538 9062 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.58e-7■■■■□ 23
UPF1Q92900 SHANK2-203ENST00000409161 9208 ntTSL 1 (best) BASIC11.83□□□□□ -0.528e-7■■■■□ 23
UPF1Q92900 NXN-207ENST00000574018 508 ntTSL 311.74□□□□□ -0.538e-7■■■■□ 23
UPF1Q92900 SHANK2-201ENST00000338508 7271 ntTSL 5 BASIC11.62□□□□□ -0.558e-7■■■■□ 23
UPF1Q92900 SHANK2-211ENST00000449833 8850 ntTSL 5 BASIC11.52□□□□□ -0.568e-7■■■■□ 23
UPF1Q92900 SHANK2-219ENST00000606715 5738 nt11.4□□□□□ -0.588e-7■■■■□ 23
UPF1Q92900 MGST2-207ENST00000616265 1278 ntAPPRIS P1 TSL 4 BASIC11.34□□□□□ -0.598e-7■■■■□ 23
UPF1Q92900 TBC1D16-201ENST00000310924 10936 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.658e-7■■■■□ 23
UPF1Q92900 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC10.67□□□□□ -0.72e-7■■■■□ 23
UPF1Q92900 SHANK2-206ENST00000424924 6821 ntTSL 510.52□□□□□ -0.738e-7■■■■□ 23
UPF1Q92900 PRMT5-207ENST00000476175 682 ntTSL 29.42□□□□□ -0.98e-7■■■■□ 23
UPF1Q92900 PRMT5-226ENST00000557443 337 ntTSL 38.78□□□□□ -18e-7■■■■□ 23
UPF1Q92900 FAM47E-STBD1-202ENST00000514140 2532 ntAPPRIS ALT2 TSL 28.68□□□□□ -1.028e-7■■■■□ 23
UPF1Q92900 SNRPD3-204ENST00000439775 640 ntTSL 323.61■■□□□ 1.379e-8■■■■□ 23
UPF1Q92900 SNRPD3-203ENST00000404603 715 ntTSL 510.96□□□□□ -0.659e-8■■■■□ 23
UPF1Q92900 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC9.59□□□□□ -0.879e-8■■■■□ 23
UPF1Q92900 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.952e-6■■■■□ 23
UPF1Q92900 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.437e-7■■■■□ 23
UPF1Q92900 TRPV1-207ENST00000572705 4166 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.783e-7■■■■□ 23
UPF1Q92900 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC32.02■■■□□ 2.721e-8■■■■□ 23
UPF1Q92900 PAFAH1B2-203ENST00000526888 1099 ntTSL 221.86■■□□□ 1.091e-8■■■■□ 23
UPF1Q92900 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.67■□□□□ 0.91e-8■■■■□ 23
UPF1Q92900 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC19.39■□□□□ 0.695e-12■■■■□ 23
UPF1Q92900 WDR83OS-201ENST00000222190 599 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.045e-12■■■■□ 23
UPF1Q92900 WDR83OS-203ENST00000598732 627 ntTSL 214.73□□□□□ -0.055e-12■■■■□ 23
UPF1Q92900 WDR83OS-202ENST00000596731 2562 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.275e-12■■■■□ 23
UPF1Q92900 PAFAH1B2-204ENST00000527958 4198 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.521e-8■■■■□ 23
UPF1Q92900 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC7.07□□□□□ -1.281e-8■■■■□ 23
UPF1Q92900 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.153e-7■■■■□ 23
UPF1Q92900 ALAD-208ENST00000482847 3247 ntTSL 212.08□□□□□ -0.483e-7■■■■□ 23
UPF1Q92900 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.51■□□□□ 0.552e-6■■■■□ 23
UPF1Q92900 ASAP3-201ENST00000336689 4050 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.462e-6■■■■□ 23
UPF1Q92900 ASAP3-209ENST00000495646 2552 ntTSL 2 BASIC10.62□□□□□ -0.712e-6■■■■□ 23
UPF1Q92900 VPS25-203ENST00000589520 639 ntTSL 313.08□□□□□ -0.323e-8■■■■□ 23
UPF1Q92900 FAM160B2-212ENST00000523633 627 ntTSL 225.25■■□□□ 1.632e-6■■■■□ 23
UPF1Q92900 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.097e-8■■■■□ 23
UPF1Q92900 AES-204ENST00000585782 505 ntTSL 221.02■□□□□ 0.962e-6■■■■□ 23
UPF1Q92900 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC20.41■□□□□ 0.863e-6■■■■□ 23
UPF1Q92900 ATP8B2-205ENST00000505882 895 ntTSL 220.35■□□□□ 0.853e-6■■■■□ 23
UPF1Q92900 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.857e-9■■■■□ 23
UPF1Q92900 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.777e-9■■■■□ 23
UPF1Q92900 MAPKAP1-218ENST00000496063 892 ntTSL 319.04■□□□□ 0.643e-6■■■■□ 23
UPF1Q92900 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.625e-12■■■■□ 23
UPF1Q92900 AES-205ENST00000586003 367 ntTSL 218.65■□□□□ 0.582e-6■■■■□ 23
UPF1Q92900 TMEM110-202ENST00000464769 542 ntTSL 418.36■□□□□ 0.533e-6■■■■□ 23
Retrieved 100 of 15,879 protein–RNA pairs in 163 ms