Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 MIR1224-201ENST00000408193 85 ntBASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 AC005829.2-201ENST00000571422 1056 ntBASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SHROOM3Q8TF72 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHROOM3Q8TF72 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 AP003097.1-201ENST00000530657 1135 ntBASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.3■□□□□ 0.84
SHROOM3Q8TF72 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 POM121L13P-201ENST00000422362 380 ntBASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 AL158211.5-201ENST00000623583 2518 ntBASIC20.29■□□□□ 0.84
SHROOM3Q8TF72 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SHROOM3Q8TF72 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms