Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC23.71■■□□□ 1.39
SMC1BQ8NDV3 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC23.71■■□□□ 1.39
SMC1BQ8NDV3 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC23.71■■□□□ 1.39
SMC1BQ8NDV3 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMC1BQ8NDV3 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.39
SMC1BQ8NDV3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.39
SMC1BQ8NDV3 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.7■■□□□ 1.39
SMC1BQ8NDV3 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SMC1BQ8NDV3 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SMC1BQ8NDV3 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC23.7■■□□□ 1.38
SMC1BQ8NDV3 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
SMC1BQ8NDV3 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SMC1BQ8NDV3 KRT18P38-201ENST00000449496 1282 ntBASIC23.7■■□□□ 1.38
SMC1BQ8NDV3 AL023973.1-201ENST00000624619 620 ntBASIC23.7■■□□□ 1.38
SMC1BQ8NDV3 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC23.7■■□□□ 1.38
SMC1BQ8NDV3 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SMC1BQ8NDV3 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SMC1BQ8NDV3 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.7■■□□□ 1.38
SMC1BQ8NDV3 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 MFAP1P1-201ENST00000442257 1255 ntBASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
SMC1BQ8NDV3 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 AC092338.2-201ENST00000568827 1415 ntBASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 SKP2-204ENST00000508514 821 ntTSL 3 BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC23.68■■□□□ 1.38
SMC1BQ8NDV3 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 GXYLT1P6-201ENST00000456472 1187 ntBASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 ZNF444P1-201ENST00000559497 298 ntBASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SMC1BQ8NDV3 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 AC092119.3-201ENST00000612618 583 ntBASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 NPAP1P7-201ENST00000613027 823 ntBASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SMC1BQ8NDV3 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 AC096733.2-201ENST00000609937 1394 ntBASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SMC1BQ8NDV3 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms