Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 SOX15-203ENST00000570788 1093 ntBASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NUP54Q7Z3B4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.39■□□□□ 0.54
NUP54Q7Z3B4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.39■□□□□ 0.54
NUP54Q7Z3B4 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 AC026366.1-201ENST00000488803 879 ntBASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 AP003097.1-201ENST00000530657 1135 ntBASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 AC006557.6-201ENST00000623071 864 ntBASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NUP54Q7Z3B4 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 AC138932.1-201ENST00000534164 6830 ntBASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 ESRRAP1-201ENST00000400596 1257 ntBASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.38■□□□□ 0.53
NUP54Q7Z3B4 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 AL512408.1-201ENST00000569378 2000 ntBASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 SMG8-203ENST00000578922 2178 ntBASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 FAM201B-201ENST00000458407 597 ntBASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 AC008687.6-201ENST00000596318 630 ntBASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 AC008403.3-201ENST00000598924 454 ntBASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 AC120498.8-201ENST00000614275 531 ntBASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.37■□□□□ 0.53
NUP54Q7Z3B4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms