Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP41Q3LFD5 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP41Q3LFD5 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
USP41Q3LFD5 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP41Q3LFD5 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP41Q3LFD5 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
USP41Q3LFD5 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
USP41Q3LFD5 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
USP41Q3LFD5 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP41Q3LFD5 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.2■□□□□ 0.98
USP41Q3LFD5 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP41Q3LFD5 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP41Q3LFD5 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP41Q3LFD5 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.2■□□□□ 0.98
USP41Q3LFD5 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP41Q3LFD5 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.2■□□□□ 0.98
USP41Q3LFD5 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.2■□□□□ 0.98
USP41Q3LFD5 AC097493.4-201ENST00000641197 219 ntBASIC21.2■□□□□ 0.98
USP41Q3LFD5 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP41Q3LFD5 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP41Q3LFD5 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.2■□□□□ 0.98
USP41Q3LFD5 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.2■□□□□ 0.98
USP41Q3LFD5 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP41Q3LFD5 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP41Q3LFD5 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP41Q3LFD5 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.19■□□□□ 0.98
USP41Q3LFD5 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP41Q3LFD5 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP41Q3LFD5 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP41Q3LFD5 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.19■□□□□ 0.98
USP41Q3LFD5 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP41Q3LFD5 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.19■□□□□ 0.98
USP41Q3LFD5 AC012306.2-201ENST00000609350 630 ntBASIC21.19■□□□□ 0.98
USP41Q3LFD5 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP41Q3LFD5 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP41Q3LFD5 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP41Q3LFD5 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP41Q3LFD5 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP41Q3LFD5 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP41Q3LFD5 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.19■□□□□ 0.98
USP41Q3LFD5 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP41Q3LFD5 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.18■□□□□ 0.98
USP41Q3LFD5 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.18■□□□□ 0.98
USP41Q3LFD5 DPP3P2-201ENST00000416030 1696 ntBASIC21.18■□□□□ 0.98
USP41Q3LFD5 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP41Q3LFD5 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP41Q3LFD5 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP41Q3LFD5 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP41Q3LFD5 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.18■□□□□ 0.98
USP41Q3LFD5 MMP23A-201ENST00000234610 1017 ntBASIC21.18■□□□□ 0.98
USP41Q3LFD5 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.18■□□□□ 0.98
USP41Q3LFD5 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP41Q3LFD5 NUDT16P1-203ENST00000513809 620 ntBASIC21.18■□□□□ 0.98
USP41Q3LFD5 KRT18P21-201ENST00000515767 1272 ntBASIC21.18■□□□□ 0.98
USP41Q3LFD5 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.18■□□□□ 0.98
USP41Q3LFD5 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP41Q3LFD5 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.18■□□□□ 0.98
USP41Q3LFD5 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP41Q3LFD5 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.18■□□□□ 0.98
USP41Q3LFD5 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP41Q3LFD5 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
USP41Q3LFD5 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.18■□□□□ 0.98
USP41Q3LFD5 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
USP41Q3LFD5 MIR1224-201ENST00000408193 85 ntBASIC21.17■□□□□ 0.98
USP41Q3LFD5 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.17■□□□□ 0.98
USP41Q3LFD5 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.17■□□□□ 0.98
USP41Q3LFD5 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
USP41Q3LFD5 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP41Q3LFD5 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
USP41Q3LFD5 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.17■□□□□ 0.98
USP41Q3LFD5 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.17■□□□□ 0.98
USP41Q3LFD5 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.17■□□□□ 0.98
USP41Q3LFD5 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP41Q3LFD5 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP41Q3LFD5 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.17■□□□□ 0.98
USP41Q3LFD5 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP41Q3LFD5 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP41Q3LFD5 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP41Q3LFD5 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.17■□□□□ 0.98
USP41Q3LFD5 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.17■□□□□ 0.98
USP41Q3LFD5 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
USP41Q3LFD5 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.16■□□□□ 0.98
USP41Q3LFD5 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP41Q3LFD5 AC007225.1-201ENST00000566331 1836 ntBASIC21.16■□□□□ 0.98
USP41Q3LFD5 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP41Q3LFD5 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP41Q3LFD5 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP41Q3LFD5 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP41Q3LFD5 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP41Q3LFD5 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP41Q3LFD5 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.16■□□□□ 0.98
USP41Q3LFD5 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP41Q3LFD5 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP41Q3LFD5 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.16■□□□□ 0.98
USP41Q3LFD5 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.16■□□□□ 0.98
USP41Q3LFD5 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.16■□□□□ 0.98
USP41Q3LFD5 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.16■□□□□ 0.98
USP41Q3LFD5 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
USP41Q3LFD5 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.16■□□□□ 0.98
USP41Q3LFD5 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms