Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 AL031963.3-201ENST00000606441 850 ntBASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTCHD3Q3KNS1 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.43■□□□□ 0.7
PTCHD3Q3KNS1 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 KRT8P20-201ENST00000423953 1409 ntBASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 PRORSD1P-201ENST00000295112 541 ntBASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 AC066615.1-201ENST00000640911 628 ntBASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PTCHD3Q3KNS1 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 UNC93B5-201ENST00000530315 699 ntBASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTCHD3Q3KNS1 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 AC023632.3-201ENST00000521633 145 ntBASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 AC006058.3-201ENST00000606217 1069 ntBASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.4■□□□□ 0.7
PTCHD3Q3KNS1 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PTCHD3Q3KNS1 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms