Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH1Q08174 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
PCDH1Q08174 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH1Q08174 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH1Q08174 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.19■□□□□ 0.66
PCDH1Q08174 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDH1Q08174 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDH1Q08174 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH1Q08174 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH1Q08174 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH1Q08174 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH1Q08174 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH1Q08174 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDH1Q08174 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH1Q08174 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH1Q08174 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH1Q08174 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH1Q08174 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PCDH1Q08174 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.18■□□□□ 0.66
PCDH1Q08174 AC091874.3-201ENST00000512672 1195 ntBASIC19.18■□□□□ 0.66
PCDH1Q08174 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDH1Q08174 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDH1Q08174 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.18■□□□□ 0.66
PCDH1Q08174 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.18■□□□□ 0.66
PCDH1Q08174 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDH1Q08174 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDH1Q08174 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.18■□□□□ 0.66
PCDH1Q08174 MYC-209ENST00000641252 345 ntBASIC19.18■□□□□ 0.66
PCDH1Q08174 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH1Q08174 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH1Q08174 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH1Q08174 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDH1Q08174 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PCDH1Q08174 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH1Q08174 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH1Q08174 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.17■□□□□ 0.66
PCDH1Q08174 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH1Q08174 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDH1Q08174 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.17■□□□□ 0.66
PCDH1Q08174 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH1Q08174 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
PCDH1Q08174 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.17■□□□□ 0.66
PCDH1Q08174 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
PCDH1Q08174 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.17■□□□□ 0.66
PCDH1Q08174 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH1Q08174 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH1Q08174 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
PCDH1Q08174 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH1Q08174 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH1Q08174 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH1Q08174 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDH1Q08174 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH1Q08174 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH1Q08174 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH1Q08174 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PCDH1Q08174 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDH1Q08174 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH1Q08174 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH1Q08174 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH1Q08174 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDH1Q08174 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH1Q08174 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH1Q08174 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH1Q08174 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.16■□□□□ 0.66
PCDH1Q08174 DUSP5P2-201ENST00000426873 1033 ntBASIC19.16■□□□□ 0.66
PCDH1Q08174 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.16■□□□□ 0.66
PCDH1Q08174 AC005829.2-201ENST00000571422 1056 ntBASIC19.16■□□□□ 0.66
PCDH1Q08174 MIR4758-201ENST00000577688 71 ntBASIC19.16■□□□□ 0.66
PCDH1Q08174 AFG3L1P-217ENST00000557444 2447 ntBASIC19.16■□□□□ 0.66
PCDH1Q08174 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH1Q08174 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH1Q08174 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDH1Q08174 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDH1Q08174 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDH1Q08174 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
PCDH1Q08174 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDH1Q08174 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH1Q08174 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.15■□□□□ 0.66
PCDH1Q08174 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH1Q08174 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
PCDH1Q08174 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH1Q08174 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDH1Q08174 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
PCDH1Q08174 SLC29A4P1-201ENST00000398760 971 ntBASIC19.15■□□□□ 0.66
PCDH1Q08174 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH1Q08174 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.15■□□□□ 0.66
PCDH1Q08174 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.15■□□□□ 0.66
PCDH1Q08174 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.15■□□□□ 0.66
PCDH1Q08174 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDH1Q08174 AC090192.1-201ENST00000517740 490 ntBASIC19.15■□□□□ 0.66
PCDH1Q08174 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.15■□□□□ 0.66
PCDH1Q08174 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.15■□□□□ 0.66
PCDH1Q08174 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.15■□□□□ 0.66
PCDH1Q08174 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH1Q08174 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
PCDH1Q08174 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH1Q08174 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH1Q08174 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PCDH1Q08174 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
PCDH1Q08174 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms