Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SRP54P61011 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SRP54P61011 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SRP54P61011 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.63■□□□□ 0.73
SRP54P61011 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.63■□□□□ 0.73
SRP54P61011 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.63■□□□□ 0.73
SRP54P61011 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.63■□□□□ 0.73
SRP54P61011 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.63■□□□□ 0.73
SRP54P61011 AP001412.1-201ENST00000608405 714 ntBASIC19.63■□□□□ 0.73
SRP54P61011 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.63■□□□□ 0.73
SRP54P61011 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SRP54P61011 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SRP54P61011 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.63■□□□□ 0.73
SRP54P61011 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SRP54P61011 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.63■□□□□ 0.73
SRP54P61011 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SRP54P61011 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.63■□□□□ 0.73
SRP54P61011 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.62■□□□□ 0.73
SRP54P61011 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.62■□□□□ 0.73
SRP54P61011 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SRP54P61011 NBPF21P-201ENST00000425093 1451 ntBASIC19.62■□□□□ 0.73
SRP54P61011 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SRP54P61011 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SRP54P61011 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SRP54P61011 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SRP54P61011 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SRP54P61011 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.62■□□□□ 0.73
SRP54P61011 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SRP54P61011 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SRP54P61011 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SRP54P61011 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SRP54P61011 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SRP54P61011 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SRP54P61011 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
SRP54P61011 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.62■□□□□ 0.73
SRP54P61011 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.62■□□□□ 0.73
SRP54P61011 RARRES2P10-201ENST00000564312 460 ntBASIC19.62■□□□□ 0.73
SRP54P61011 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SRP54P61011 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.62■□□□□ 0.73
SRP54P61011 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.62■□□□□ 0.73
SRP54P61011 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SRP54P61011 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SRP54P61011 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SRP54P61011 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SRP54P61011 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SRP54P61011 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SRP54P61011 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SRP54P61011 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SRP54P61011 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.61■□□□□ 0.73
SRP54P61011 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
SRP54P61011 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.61■□□□□ 0.73
SRP54P61011 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SRP54P61011 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.61■□□□□ 0.73
SRP54P61011 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SRP54P61011 AL049637.2-201ENST00000641778 930 ntBASIC19.61■□□□□ 0.73
SRP54P61011 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SRP54P61011 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SRP54P61011 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.61■□□□□ 0.73
SRP54P61011 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SRP54P61011 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SRP54P61011 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SRP54P61011 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SRP54P61011 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SRP54P61011 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SRP54P61011 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.61■□□□□ 0.73
SRP54P61011 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SRP54P61011 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SRP54P61011 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
SRP54P61011 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SRP54P61011 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.6■□□□□ 0.73
SRP54P61011 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.6■□□□□ 0.73
SRP54P61011 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SRP54P61011 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SRP54P61011 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SRP54P61011 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.6■□□□□ 0.73
SRP54P61011 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.6■□□□□ 0.73
SRP54P61011 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SRP54P61011 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SRP54P61011 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.6■□□□□ 0.73
SRP54P61011 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.6■□□□□ 0.73
SRP54P61011 AL137060.1-201ENST00000618151 2648 ntBASIC19.6■□□□□ 0.73
SRP54P61011 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SRP54P61011 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.6■□□□□ 0.73
SRP54P61011 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SRP54P61011 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
SRP54P61011 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
SRP54P61011 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.6■□□□□ 0.73
SRP54P61011 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SRP54P61011 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
SRP54P61011 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.59■□□□□ 0.73
SRP54P61011 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SRP54P61011 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SRP54P61011 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
SRP54P61011 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.59■□□□□ 0.73
SRP54P61011 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SRP54P61011 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SRP54P61011 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SRP54P61011 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SRP54P61011 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SRP54P61011 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms