Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
EPHB3P54753 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.84■□□□□ 0.93
EPHB3P54753 AP006587.1-201ENST00000534129 1502 ntBASIC20.84■□□□□ 0.93
EPHB3P54753 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
EPHB3P54753 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
EPHB3P54753 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
EPHB3P54753 AC087499.1-201ENST00000418141 1075 ntBASIC20.84■□□□□ 0.93
EPHB3P54753 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.84■□□□□ 0.93
EPHB3P54753 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.84■□□□□ 0.93
EPHB3P54753 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
EPHB3P54753 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
EPHB3P54753 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.84■□□□□ 0.93
EPHB3P54753 AC133561.5-201ENST00000635547 218 ntBASIC20.84■□□□□ 0.93
EPHB3P54753 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
EPHB3P54753 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.84■□□□□ 0.93
EPHB3P54753 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
EPHB3P54753 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
EPHB3P54753 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
EPHB3P54753 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.83■□□□□ 0.93
EPHB3P54753 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.83■□□□□ 0.93
EPHB3P54753 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.83■□□□□ 0.93
EPHB3P54753 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
EPHB3P54753 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.83■□□□□ 0.93
EPHB3P54753 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
EPHB3P54753 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.83■□□□□ 0.92
EPHB3P54753 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
EPHB3P54753 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
EPHB3P54753 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
EPHB3P54753 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
EPHB3P54753 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
EPHB3P54753 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
EPHB3P54753 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
EPHB3P54753 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
EPHB3P54753 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
EPHB3P54753 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
EPHB3P54753 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.82■□□□□ 0.92
EPHB3P54753 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
EPHB3P54753 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
EPHB3P54753 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
EPHB3P54753 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
EPHB3P54753 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.81■□□□□ 0.92
EPHB3P54753 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
EPHB3P54753 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
EPHB3P54753 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.81■□□□□ 0.92
EPHB3P54753 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.81■□□□□ 0.92
EPHB3P54753 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
EPHB3P54753 KSR1P1-201ENST00000446298 240 ntBASIC20.81■□□□□ 0.92
EPHB3P54753 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.81■□□□□ 0.92
EPHB3P54753 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.81■□□□□ 0.92
EPHB3P54753 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.81■□□□□ 0.92
EPHB3P54753 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.81■□□□□ 0.92
EPHB3P54753 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.81■□□□□ 0.92
EPHB3P54753 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.81■□□□□ 0.92
EPHB3P54753 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
EPHB3P54753 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.81■□□□□ 0.92
EPHB3P54753 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
EPHB3P54753 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
EPHB3P54753 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
EPHB3P54753 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
EPHB3P54753 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.81■□□□□ 0.92
EPHB3P54753 AC116351.2-201ENST00000606540 1585 ntBASIC20.8■□□□□ 0.92
EPHB3P54753 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
EPHB3P54753 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
EPHB3P54753 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
EPHB3P54753 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
EPHB3P54753 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.8■□□□□ 0.92
EPHB3P54753 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
EPHB3P54753 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
EPHB3P54753 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.8■□□□□ 0.92
EPHB3P54753 NUDT16P1-203ENST00000513809 620 ntBASIC20.8■□□□□ 0.92
EPHB3P54753 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
EPHB3P54753 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
EPHB3P54753 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.8■□□□□ 0.92
EPHB3P54753 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
EPHB3P54753 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
EPHB3P54753 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.8■□□□□ 0.92
EPHB3P54753 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
EPHB3P54753 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
EPHB3P54753 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
EPHB3P54753 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
EPHB3P54753 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
EPHB3P54753 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
EPHB3P54753 NIFKP9-201ENST00000419265 221 ntBASIC20.79■□□□□ 0.92
EPHB3P54753 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
EPHB3P54753 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.79■□□□□ 0.92
EPHB3P54753 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.79■□□□□ 0.92
EPHB3P54753 CR392000.1-201ENST00000624770 1228 ntBASIC20.79■□□□□ 0.92
EPHB3P54753 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
EPHB3P54753 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
EPHB3P54753 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
EPHB3P54753 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
EPHB3P54753 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.79■□□□□ 0.92
EPHB3P54753 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
EPHB3P54753 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.79■□□□□ 0.92
EPHB3P54753 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.79■□□□□ 0.92
EPHB3P54753 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
EPHB3P54753 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.78■□□□□ 0.92
EPHB3P54753 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
EPHB3P54753 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
EPHB3P54753 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms