Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN9P43378 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN9P43378 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.7■□□□□ 0.9
PTPN9P43378 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.7■□□□□ 0.9
PTPN9P43378 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN9P43378 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN9P43378 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN9P43378 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.7■□□□□ 0.9
PTPN9P43378 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.7■□□□□ 0.9
PTPN9P43378 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN9P43378 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN9P43378 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.7■□□□□ 0.9
PTPN9P43378 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.7■□□□□ 0.9
PTPN9P43378 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.7■□□□□ 0.9
PTPN9P43378 AC116351.2-201ENST00000606540 1585 ntBASIC20.7■□□□□ 0.9
PTPN9P43378 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN9P43378 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN9P43378 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN9P43378 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.7■□□□□ 0.9
PTPN9P43378 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN9P43378 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.69■□□□□ 0.9
PTPN9P43378 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN9P43378 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.69■□□□□ 0.9
PTPN9P43378 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN9P43378 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN9P43378 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.69■□□□□ 0.9
PTPN9P43378 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN9P43378 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.69■□□□□ 0.9
PTPN9P43378 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.69■□□□□ 0.9
PTPN9P43378 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN9P43378 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.69■□□□□ 0.9
PTPN9P43378 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.69■□□□□ 0.9
PTPN9P43378 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.69■□□□□ 0.9
PTPN9P43378 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN9P43378 UNC93B5-201ENST00000530315 699 ntBASIC20.69■□□□□ 0.9
PTPN9P43378 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN9P43378 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
PTPN9P43378 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.69■□□□□ 0.9
PTPN9P43378 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.69■□□□□ 0.9
PTPN9P43378 SOX15-203ENST00000570788 1093 ntBASIC20.69■□□□□ 0.9
PTPN9P43378 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.69■□□□□ 0.9
PTPN9P43378 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
PTPN9P43378 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN9P43378 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN9P43378 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
PTPN9P43378 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN9P43378 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN9P43378 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN9P43378 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN9P43378 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN9P43378 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
PTPN9P43378 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN9P43378 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.68■□□□□ 0.9
PTPN9P43378 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN9P43378 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN9P43378 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN9P43378 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.68■□□□□ 0.9
PTPN9P43378 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.68■□□□□ 0.9
PTPN9P43378 RPS2P52-201ENST00000469610 820 ntBASIC20.68■□□□□ 0.9
PTPN9P43378 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.68■□□□□ 0.9
PTPN9P43378 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.68■□□□□ 0.9
PTPN9P43378 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.68■□□□□ 0.9
PTPN9P43378 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.68■□□□□ 0.9
PTPN9P43378 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.68■□□□□ 0.9
PTPN9P43378 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN9P43378 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.68■□□□□ 0.9
PTPN9P43378 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN9P43378 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN9P43378 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN9P43378 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
PTPN9P43378 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTPN9P43378 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN9P43378 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PTPN9P43378 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.67■□□□□ 0.9
PTPN9P43378 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN9P43378 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PTPN9P43378 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN9P43378 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN9P43378 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN9P43378 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.67■□□□□ 0.9
PTPN9P43378 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.67■□□□□ 0.9
PTPN9P43378 AC120498.8-201ENST00000614275 531 ntBASIC20.67■□□□□ 0.9
PTPN9P43378 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
PTPN9P43378 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN9P43378 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.67■□□□□ 0.9
PTPN9P43378 AC018553.1-201ENST00000616682 1458 ntBASIC20.67■□□□□ 0.9
PTPN9P43378 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN9P43378 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN9P43378 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.67■□□□□ 0.9
PTPN9P43378 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PTPN9P43378 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTPN9P43378 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PTPN9P43378 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.66■□□□□ 0.9
PTPN9P43378 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTPN9P43378 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PTPN9P43378 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
PTPN9P43378 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PTPN9P43378 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.66■□□□□ 0.9
PTPN9P43378 UNC93B4-201ENST00000505679 747 ntBASIC20.66■□□□□ 0.9
PTPN9P43378 KRT18P6-201ENST00000555540 1265 ntBASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms