Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.94■□□□□ 0.62
MSX2P35548 AC104581.1-202ENST00000635932 2618 ntBASIC18.94■□□□□ 0.62
MSX2P35548 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.94■□□□□ 0.62
MSX2P35548 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.94■□□□□ 0.62
MSX2P35548 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC18.94■□□□□ 0.62
MSX2P35548 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
MSX2P35548 SLC7A5P2-201ENST00000553010 536 ntBASIC18.94■□□□□ 0.62
MSX2P35548 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
MSX2P35548 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
MSX2P35548 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.94■□□□□ 0.62
MSX2P35548 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
MSX2P35548 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.94■□□□□ 0.62
MSX2P35548 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
MSX2P35548 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSX2P35548 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.93■□□□□ 0.62
MSX2P35548 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
MSX2P35548 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSX2P35548 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.93■□□□□ 0.62
MSX2P35548 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX2P35548 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
MSX2P35548 AL049812.1-201ENST00000432563 2267 ntBASIC18.93■□□□□ 0.62
MSX2P35548 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSX2P35548 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSX2P35548 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC18.93■□□□□ 0.62
MSX2P35548 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX2P35548 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX2P35548 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC18.93■□□□□ 0.62
MSX2P35548 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSX2P35548 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MSX2P35548 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.93■□□□□ 0.62
MSX2P35548 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSX2P35548 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSX2P35548 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX2P35548 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
MSX2P35548 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
MSX2P35548 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSX2P35548 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MSX2P35548 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
MSX2P35548 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
MSX2P35548 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX2P35548 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
MSX2P35548 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX2P35548 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.92■□□□□ 0.62
MSX2P35548 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 KRT87P-202ENST00000534226 1464 ntBASIC18.92■□□□□ 0.62
MSX2P35548 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.92■□□□□ 0.62
MSX2P35548 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.92■□□□□ 0.62
MSX2P35548 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.92■□□□□ 0.62
MSX2P35548 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.92■□□□□ 0.62
MSX2P35548 AC012414.1-201ENST00000556676 535 ntBASIC18.92■□□□□ 0.62
MSX2P35548 AC138907.5-202ENST00000569484 235 ntBASIC18.92■□□□□ 0.62
MSX2P35548 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC18.92■□□□□ 0.62
MSX2P35548 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
MSX2P35548 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MSX2P35548 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.92■□□□□ 0.62
MSX2P35548 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.92■□□□□ 0.62
MSX2P35548 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.92■□□□□ 0.62
MSX2P35548 AC018470.1-201ENST00000624790 3129 ntBASIC18.91■□□□□ 0.62
MSX2P35548 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MSX2P35548 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.91■□□□□ 0.62
MSX2P35548 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX2P35548 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX2P35548 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX2P35548 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
MSX2P35548 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
MSX2P35548 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
MSX2P35548 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX2P35548 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSX2P35548 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MSX2P35548 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
MSX2P35548 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
MSX2P35548 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms