Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC16.83■□□□□ 0.28
USF1P22415 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
USF1P22415 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
USF1P22415 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC16.83■□□□□ 0.28
USF1P22415 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USF1P22415 AC113410.3-201ENST00000623366 203 ntBASIC16.83■□□□□ 0.28
USF1P22415 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USF1P22415 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USF1P22415 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
USF1P22415 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
USF1P22415 AC011484.1-201ENST00000377652 1995 ntBASIC16.82■□□□□ 0.28
USF1P22415 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC16.82■□□□□ 0.28
USF1P22415 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.82■□□□□ 0.28
USF1P22415 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
USF1P22415 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
USF1P22415 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
USF1P22415 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
USF1P22415 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
USF1P22415 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC16.82■□□□□ 0.28
USF1P22415 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.82■□□□□ 0.28
USF1P22415 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
USF1P22415 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.82■□□□□ 0.28
USF1P22415 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC16.82■□□□□ 0.28
USF1P22415 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
USF1P22415 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF1P22415 AC073130.3-201ENST00000624389 2278 ntBASIC16.81■□□□□ 0.28
USF1P22415 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF1P22415 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC16.81■□□□□ 0.28
USF1P22415 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF1P22415 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USF1P22415 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF1P22415 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USF1P22415 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
USF1P22415 STK25-205ENST00000405883 1904 ntTSL 2 BASIC16.81■□□□□ 0.28
USF1P22415 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC16.81■□□□□ 0.28
USF1P22415 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF1P22415 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.81■□□□□ 0.28
USF1P22415 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.81■□□□□ 0.28
USF1P22415 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC16.81■□□□□ 0.28
USF1P22415 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.81■□□□□ 0.28
USF1P22415 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.81■□□□□ 0.28
USF1P22415 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
USF1P22415 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
USF1P22415 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.81■□□□□ 0.28
USF1P22415 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF1P22415 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
USF1P22415 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF1P22415 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
USF1P22415 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USF1P22415 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF1P22415 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USF1P22415 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
USF1P22415 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.8■□□□□ 0.28
USF1P22415 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC16.8■□□□□ 0.28
USF1P22415 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
USF1P22415 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
USF1P22415 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
USF1P22415 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.8■□□□□ 0.28
USF1P22415 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.8■□□□□ 0.28
USF1P22415 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.8■□□□□ 0.28
USF1P22415 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC16.8■□□□□ 0.28
USF1P22415 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.8■□□□□ 0.28
USF1P22415 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 AL121829.2-201ENST00000620908 328 ntBASIC16.8■□□□□ 0.28
USF1P22415 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.8■□□□□ 0.28
USF1P22415 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
USF1P22415 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
USF1P22415 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USF1P22415 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.8■□□□□ 0.28
USF1P22415 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
USF1P22415 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms