Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CTDNEP1O95476 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC23.1■■□□□ 1.29
CTDNEP1O95476 PKD1P6-201ENST00000343738 4769 ntBASIC23.1■■□□□ 1.29
CTDNEP1O95476 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CTDNEP1O95476 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
CTDNEP1O95476 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC23.09■■□□□ 1.29
CTDNEP1O95476 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC23.09■■□□□ 1.29
CTDNEP1O95476 AC007952.6-201ENST00000573168 2673 ntBASIC23.09■■□□□ 1.29
CTDNEP1O95476 AC003957.1-201ENST00000625108 2673 ntBASIC23.09■■□□□ 1.29
CTDNEP1O95476 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC23.09■■□□□ 1.29
CTDNEP1O95476 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CTDNEP1O95476 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
CTDNEP1O95476 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CTDNEP1O95476 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC23.09■■□□□ 1.29
CTDNEP1O95476 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.09■■□□□ 1.29
CTDNEP1O95476 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC23.09■■□□□ 1.29
CTDNEP1O95476 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CTDNEP1O95476 AC104771.1-201ENST00000603335 964 ntBASIC23.09■■□□□ 1.29
CTDNEP1O95476 AC083880.1-201ENST00000608266 535 ntBASIC23.09■■□□□ 1.29
CTDNEP1O95476 AL109923.1-201ENST00000618799 583 ntBASIC23.09■■□□□ 1.29
CTDNEP1O95476 CRK-204ENST00000574295 1391 ntTSL 5 BASIC23.09■■□□□ 1.29
CTDNEP1O95476 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC23.09■■□□□ 1.29
CTDNEP1O95476 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
CTDNEP1O95476 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 AC116562.4-201ENST00000641316 2276 ntBASIC23.08■■□□□ 1.29
CTDNEP1O95476 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC23.08■■□□□ 1.29
CTDNEP1O95476 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC23.08■■□□□ 1.29
CTDNEP1O95476 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC23.08■■□□□ 1.29
CTDNEP1O95476 AC005829.2-201ENST00000571422 1056 ntBASIC23.08■■□□□ 1.29
CTDNEP1O95476 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
CTDNEP1O95476 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.08■■□□□ 1.29
CTDNEP1O95476 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC23.08■■□□□ 1.29
CTDNEP1O95476 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CTDNEP1O95476 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CTDNEP1O95476 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CTDNEP1O95476 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
CTDNEP1O95476 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CTDNEP1O95476 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CTDNEP1O95476 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
CTDNEP1O95476 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
CTDNEP1O95476 AP001271.2-201ENST00000624018 1556 ntBASIC23.07■■□□□ 1.28
CTDNEP1O95476 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.07■■□□□ 1.28
CTDNEP1O95476 GATS-209ENST00000454084 1030 ntTSL 3 BASIC23.07■■□□□ 1.28
CTDNEP1O95476 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CTDNEP1O95476 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC23.07■■□□□ 1.28
CTDNEP1O95476 MIR4758-201ENST00000577688 71 ntBASIC23.07■■□□□ 1.28
CTDNEP1O95476 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC23.07■■□□□ 1.28
CTDNEP1O95476 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
CTDNEP1O95476 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CTDNEP1O95476 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
CTDNEP1O95476 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTDNEP1O95476 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC23.06■■□□□ 1.28
CTDNEP1O95476 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC23.06■■□□□ 1.28
CTDNEP1O95476 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
CTDNEP1O95476 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTDNEP1O95476 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
CTDNEP1O95476 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
CTDNEP1O95476 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CTDNEP1O95476 AC142086.2-201ENST00000569753 217 ntBASIC23.06■■□□□ 1.28
CTDNEP1O95476 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC23.06■■□□□ 1.28
CTDNEP1O95476 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.06■■□□□ 1.28
CTDNEP1O95476 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CTDNEP1O95476 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTDNEP1O95476 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC23.06■■□□□ 1.28
CTDNEP1O95476 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
CTDNEP1O95476 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC23.05■■□□□ 1.28
CTDNEP1O95476 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTDNEP1O95476 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTDNEP1O95476 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CTDNEP1O95476 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTDNEP1O95476 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTDNEP1O95476 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTDNEP1O95476 AC073210.2-201ENST00000430369 194 ntBASIC23.05■■□□□ 1.28
CTDNEP1O95476 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.05■■□□□ 1.28
CTDNEP1O95476 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC23.05■■□□□ 1.28
CTDNEP1O95476 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTDNEP1O95476 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC23.05■■□□□ 1.28
CTDNEP1O95476 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
CTDNEP1O95476 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTDNEP1O95476 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC23.05■■□□□ 1.28
CTDNEP1O95476 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
CTDNEP1O95476 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTDNEP1O95476 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CTDNEP1O95476 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CTDNEP1O95476 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms