Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PRKNO60260 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PRKNO60260 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.53■□□□□ 0.56
PRKNO60260 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PRKNO60260 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PRKNO60260 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PRKNO60260 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.53■□□□□ 0.56
PRKNO60260 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PRKNO60260 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
PRKNO60260 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PRKNO60260 KRT8P20-201ENST00000423953 1409 ntBASIC18.53■□□□□ 0.56
PRKNO60260 RPS2P52-201ENST00000469610 820 ntBASIC18.53■□□□□ 0.56
PRKNO60260 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.53■□□□□ 0.56
PRKNO60260 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.53■□□□□ 0.56
PRKNO60260 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.53■□□□□ 0.56
PRKNO60260 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PRKNO60260 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
PRKNO60260 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
PRKNO60260 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PRKNO60260 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.52■□□□□ 0.56
PRKNO60260 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PRKNO60260 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PRKNO60260 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PRKNO60260 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.52■□□□□ 0.56
PRKNO60260 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PRKNO60260 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PRKNO60260 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.52■□□□□ 0.56
PRKNO60260 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.52■□□□□ 0.56
PRKNO60260 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PRKNO60260 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.52■□□□□ 0.56
PRKNO60260 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.52■□□□□ 0.56
PRKNO60260 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
PRKNO60260 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PRKNO60260 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PRKNO60260 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.52■□□□□ 0.55
PRKNO60260 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PRKNO60260 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
PRKNO60260 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.51■□□□□ 0.55
PRKNO60260 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.51■□□□□ 0.55
PRKNO60260 LINC01521-201ENST00000504184 1943 ntBASIC18.51■□□□□ 0.55
PRKNO60260 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PRKNO60260 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PRKNO60260 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PRKNO60260 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PRKNO60260 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PRKNO60260 GCSHP5-201ENST00000443090 522 ntBASIC18.51■□□□□ 0.55
PRKNO60260 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.51■□□□□ 0.55
PRKNO60260 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.51■□□□□ 0.55
PRKNO60260 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PRKNO60260 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
PRKNO60260 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PRKNO60260 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
PRKNO60260 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PRKNO60260 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PRKNO60260 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
PRKNO60260 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PRKNO60260 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.5■□□□□ 0.55
PRKNO60260 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
PRKNO60260 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.5■□□□□ 0.55
PRKNO60260 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PRKNO60260 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.5■□□□□ 0.55
PRKNO60260 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PRKNO60260 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PRKNO60260 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.5■□□□□ 0.55
PRKNO60260 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.5■□□□□ 0.55
PRKNO60260 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
PRKNO60260 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PRKNO60260 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PRKNO60260 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PRKNO60260 HLA-G-202ENST00000376815 851 ntBASIC18.5■□□□□ 0.55
PRKNO60260 HLA-G-203ENST00000376818 1127 ntBASIC18.5■□□□□ 0.55
PRKNO60260 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
PRKNO60260 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.5■□□□□ 0.55
PRKNO60260 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
PRKNO60260 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.5■□□□□ 0.55
PRKNO60260 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.5■□□□□ 0.55
PRKNO60260 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.5■□□□□ 0.55
PRKNO60260 RN7SL471P-201ENST00000580476 299 ntBASIC18.5■□□□□ 0.55
PRKNO60260 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.5■□□□□ 0.55
PRKNO60260 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
PRKNO60260 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.5■□□□□ 0.55
PRKNO60260 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PRKNO60260 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PRKNO60260 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PRKNO60260 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.5■□□□□ 0.55
PRKNO60260 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PRKNO60260 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PRKNO60260 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
PRKNO60260 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
PRKNO60260 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
PRKNO60260 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
PRKNO60260 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PRKNO60260 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PRKNO60260 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PRKNO60260 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.49■□□□□ 0.55
PRKNO60260 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PRKNO60260 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PRKNO60260 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.49■□□□□ 0.55
PRKNO60260 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
PRKNO60260 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms