Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC11O43248 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC11O43248 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC11O43248 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC11O43248 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC11O43248 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC11O43248 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.31■□□□□ 0.84
HOXC11O43248 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HOXC11O43248 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC11O43248 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC11O43248 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC11O43248 NIFKP9-201ENST00000419265 221 ntBASIC20.31■□□□□ 0.84
HOXC11O43248 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.31■□□□□ 0.84
HOXC11O43248 NUDT16P1-203ENST00000513809 620 ntBASIC20.31■□□□□ 0.84
HOXC11O43248 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.31■□□□□ 0.84
HOXC11O43248 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.31■□□□□ 0.84
HOXC11O43248 AP006587.1-201ENST00000534129 1502 ntBASIC20.31■□□□□ 0.84
HOXC11O43248 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.31■□□□□ 0.84
HOXC11O43248 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.31■□□□□ 0.84
HOXC11O43248 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC11O43248 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC11O43248 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXC11O43248 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.31■□□□□ 0.84
HOXC11O43248 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
HOXC11O43248 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC11O43248 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC11O43248 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.3■□□□□ 0.84
HOXC11O43248 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
HOXC11O43248 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC11O43248 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC11O43248 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC11O43248 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC11O43248 KSR1P1-201ENST00000446298 240 ntBASIC20.3■□□□□ 0.84
HOXC11O43248 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.3■□□□□ 0.84
HOXC11O43248 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.3■□□□□ 0.84
HOXC11O43248 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.3■□□□□ 0.84
HOXC11O43248 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC11O43248 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.3■□□□□ 0.84
HOXC11O43248 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.3■□□□□ 0.84
HOXC11O43248 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.3■□□□□ 0.84
HOXC11O43248 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.3■□□□□ 0.84
HOXC11O43248 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC11O43248 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC11O43248 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.3■□□□□ 0.84
HOXC11O43248 TFP1-202ENST00000475455 1573 ntBASIC20.29■□□□□ 0.84
HOXC11O43248 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC11O43248 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.29■□□□□ 0.84
HOXC11O43248 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC11O43248 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC11O43248 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC11O43248 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC11O43248 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.29■□□□□ 0.84
HOXC11O43248 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC11O43248 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.29■□□□□ 0.84
HOXC11O43248 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.29■□□□□ 0.84
HOXC11O43248 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC11O43248 AC097493.4-201ENST00000641197 219 ntBASIC20.29■□□□□ 0.84
HOXC11O43248 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC11O43248 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC11O43248 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC11O43248 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
HOXC11O43248 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXC11O43248 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC11O43248 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC11O43248 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC11O43248 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
HOXC11O43248 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC11O43248 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC11O43248 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC11O43248 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC11O43248 FAM210CP-201ENST00000445714 574 ntBASIC20.28■□□□□ 0.84
HOXC11O43248 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.28■□□□□ 0.84
HOXC11O43248 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC11O43248 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.28■□□□□ 0.84
HOXC11O43248 AC012306.2-201ENST00000609350 630 ntBASIC20.28■□□□□ 0.84
HOXC11O43248 AC133561.5-201ENST00000635547 218 ntBASIC20.28■□□□□ 0.84
HOXC11O43248 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC11O43248 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXC11O43248 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC11O43248 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC11O43248 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
HOXC11O43248 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC11O43248 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC11O43248 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXC11O43248 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC11O43248 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC11O43248 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
HOXC11O43248 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.27■□□□□ 0.84
HOXC11O43248 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC11O43248 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXC11O43248 AC018553.1-201ENST00000616682 1458 ntBASIC20.27■□□□□ 0.84
HOXC11O43248 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC11O43248 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC11O43248 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.27■□□□□ 0.84
HOXC11O43248 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.27■□□□□ 0.84
HOXC11O43248 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
HOXC11O43248 C1QL1P1-201ENST00000568105 661 ntBASIC20.27■□□□□ 0.84
HOXC11O43248 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC11O43248 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXC11O43248 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms