Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC34.3■■■■□ 3.08
CUX2O14529 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC34.3■■■■□ 3.08
CUX2O14529 AL023973.1-201ENST00000624619 620 ntBASIC34.3■■■■□ 3.08
CUX2O14529 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC34.3■■■■□ 3.08
CUX2O14529 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC34.3■■■■□ 3.08
CUX2O14529 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC34.29■■■■□ 3.08
CUX2O14529 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC34.29■■■■□ 3.08
CUX2O14529 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
CUX2O14529 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
CUX2O14529 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
CUX2O14529 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC34.29■■■■□ 3.08
CUX2O14529 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC34.29■■■■□ 3.08
CUX2O14529 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC34.29■■■■□ 3.08
CUX2O14529 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
CUX2O14529 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
CUX2O14529 AC022898.2-201ENST00000616822 1312 ntBASIC34.29■■■■□ 3.08
CUX2O14529 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC34.28■■■■□ 3.08
CUX2O14529 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC34.28■■■■□ 3.08
CUX2O14529 HOTTIP_1.1-201ENST00000620415 57 ntBASIC34.28■■■■□ 3.08
CUX2O14529 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC34.28■■■■□ 3.08
CUX2O14529 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC34.28■■■■□ 3.08
CUX2O14529 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC34.28■■■■□ 3.08
CUX2O14529 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
CUX2O14529 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC34.28■■■■□ 3.08
CUX2O14529 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC34.27■■■■□ 3.08
CUX2O14529 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC34.27■■■■□ 3.08
CUX2O14529 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC34.27■■■■□ 3.08
CUX2O14529 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
CUX2O14529 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC34.27■■■■□ 3.08
CUX2O14529 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC34.27■■■■□ 3.08
CUX2O14529 AL160237.2-201ENST00000556165 472 ntBASIC34.27■■■■□ 3.08
CUX2O14529 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC34.27■■■■□ 3.08
CUX2O14529 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC34.27■■■■□ 3.08
CUX2O14529 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
CUX2O14529 FAM220CP-201ENST00000395253 831 ntBASIC34.27■■■■□ 3.08
CUX2O14529 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC34.27■■■■□ 3.08
CUX2O14529 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC34.27■■■■□ 3.08
CUX2O14529 C1orf229-201ENST00000623686 2258 ntBASIC34.27■■■■□ 3.08
CUX2O14529 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC34.26■■■■□ 3.08
CUX2O14529 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC34.26■■■■□ 3.08
CUX2O14529 AC096733.2-201ENST00000609937 1394 ntBASIC34.26■■■■□ 3.07
CUX2O14529 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC34.26■■■■□ 3.07
CUX2O14529 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
CUX2O14529 AC004980.1-204ENST00000429707 299 ntBASIC34.26■■■■□ 3.07
CUX2O14529 AC112907.2-201ENST00000448639 330 ntBASIC34.26■■■■□ 3.07
CUX2O14529 DFFB-212ENST00000625756 649 ntTSL 5 BASIC34.26■■■■□ 3.07
CUX2O14529 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC34.25■■■■□ 3.07
CUX2O14529 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
CUX2O14529 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
CUX2O14529 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
CUX2O14529 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
CUX2O14529 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
CUX2O14529 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC34.25■■■■□ 3.07
CUX2O14529 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC34.25■■■■□ 3.07
CUX2O14529 LY6E-213ENST00000522528 606 ntTSL 3 BASIC34.25■■■■□ 3.07
CUX2O14529 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC34.25■■■■□ 3.07
CUX2O14529 AC092338.2-201ENST00000568827 1415 ntBASIC34.25■■■■□ 3.07
CUX2O14529 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
CUX2O14529 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC34.24■■■■□ 3.07
CUX2O14529 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC34.24■■■■□ 3.07
CUX2O14529 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
CUX2O14529 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC34.24■■■■□ 3.07
CUX2O14529 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC34.24■■■■□ 3.07
CUX2O14529 ETFA-216ENST00000560726 942 ntTSL 3 BASIC34.24■■■■□ 3.07
CUX2O14529 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC34.24■■■■□ 3.07
CUX2O14529 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
CUX2O14529 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC34.24■■■■□ 3.07
CUX2O14529 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
CUX2O14529 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC34.23■■■■□ 3.07
CUX2O14529 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
CUX2O14529 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
CUX2O14529 PMS2P1-201ENST00000431037 1228 ntBASIC34.23■■■■□ 3.07
CUX2O14529 GXYLT1P6-201ENST00000456472 1187 ntBASIC34.23■■■■□ 3.07
CUX2O14529 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC34.23■■■■□ 3.07
CUX2O14529 HYMAI.1-201ENST00000620949 238 ntBASIC34.23■■■■□ 3.07
CUX2O14529 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
CUX2O14529 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC34.23■■■■□ 3.07
CUX2O14529 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC34.23■■■■□ 3.07
CUX2O14529 KRT18P1-202ENST00000452408 1331 ntBASIC34.23■■■■□ 3.07
CUX2O14529 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC34.23■■■■□ 3.07
CUX2O14529 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
CUX2O14529 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
CUX2O14529 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
CUX2O14529 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC34.22■■■■□ 3.07
CUX2O14529 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC34.22■■■■□ 3.07
CUX2O14529 AC079781.3-201ENST00000449110 356 ntBASIC34.22■■■■□ 3.07
CUX2O14529 AL512604.3-201ENST00000569583 964 ntBASIC34.22■■■■□ 3.07
CUX2O14529 CYGB-204ENST00000589342 815 ntTSL 3 BASIC34.22■■■■□ 3.07
CUX2O14529 AP000692.2-201ENST00000608391 879 ntBASIC34.22■■■■□ 3.07
CUX2O14529 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC34.22■■■■□ 3.07
CUX2O14529 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC34.21■■■■□ 3.07
CUX2O14529 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
CUX2O14529 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
CUX2O14529 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
CUX2O14529 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC34.21■■■■□ 3.07
CUX2O14529 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC34.21■■■■□ 3.07
CUX2O14529 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
CUX2O14529 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
CUX2O14529 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
CUX2O14529 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms