Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
CCDC28BQ9BUN5 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC28BQ9BUN5 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC28BQ9BUN5 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC28BQ9BUN5 AP002800.1-201ENST00000624982 2225 ntBASIC6.57□□□□□ -1.36
CCDC28BQ9BUN5 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC28BQ9BUN5 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC28BQ9BUN5 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC6.57□□□□□ -1.36
CCDC28BQ9BUN5 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC28BQ9BUN5 ATP5BP1-201ENST00000411980 1574 ntBASIC6.57□□□□□ -1.36
CCDC28BQ9BUN5 Z93022.1-201ENST00000433228 1554 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC28BQ9BUN5 AC011369.2-201ENST00000624423 1567 ntBASIC6.57□□□□□ -1.36
CCDC28BQ9BUN5 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
CCDC28BQ9BUN5 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AC083837.1-201ENST00000565297 2994 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 SNORD8-201ENST00000363915 110 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 RPS26P38-201ENST00000414476 348 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 BX679664.2-201ENST00000439282 283 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 LINC00460-203ENST00000444865 739 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AL591122.1-201ENST00000487348 492 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AC110760.2-202ENST00000507517 946 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AC083906.1-201ENST00000509298 406 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AC117383.2-201ENST00000514722 322 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 RNA5SP518-201ENST00000515957 119 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 USP2-AS1-203ENST00000530002 764 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 OR52K3P-201ENST00000531655 943 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AC022796.1-202ENST00000531882 477 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 KIAA1328-209ENST00000592521 1190 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AC063952.1-203ENST00000634410 658 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 MTCO1P25-201ENST00000414449 1799 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 NLRP3P1-201ENST00000622303 1785 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 AC130360.2-201ENST00000533477 1556 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 RACGAP1P-201ENST00000550663 1879 ntBASIC6.56□□□□□ -1.36
CCDC28BQ9BUN5 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 AL451064.2-201ENST00000623514 1654 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 EEF1A1P12-201ENST00000443590 1346 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 PPIAP26-201ENST00000377951 522 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 AL157698.1-201ENST00000415190 1011 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 ARPP21-217ENST00000436702 561 ntTSL 4 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 GNA14-AS1-201ENST00000439145 605 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 NMNAT1P3-201ENST00000457517 888 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 TAAR3P-202ENST00000481759 1025 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 AC117392.1-201ENST00000487061 596 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 AC114728.1-201ENST00000488289 483 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 TECRP2-201ENST00000503270 928 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 RASGRF2-AS1-201ENST00000505107 665 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 AC106798.1-202ENST00000506819 589 ntTSL 4 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 RNA5SP278-201ENST00000517055 102 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 AL161747.2-201ENST00000535893 472 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 LDHC-204ENST00000536880 957 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 AP000619.2-201ENST00000546014 969 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 LYZ-202ENST00000548839 558 ntTSL 2 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 AC090971.3-201ENST00000557871 1041 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 LINC01582-201ENST00000560195 560 ntTSL 4 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 AC007262.1-201ENST00000604099 321 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 MIR6834-201ENST00000622807 81 ntBASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 JAML-213ENST00000640745 951 ntTSL 5 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CCDC28BQ9BUN5 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms