Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 CEACAM5-208ENST00000615021 1694 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HLA-CQ95604 LINC00265-201ENST00000340510 3049 ntTSL 5 BASIC8.75□□□□□ -1.01
HLA-CQ95604 POP4-202ENST00000585603 3385 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HLA-CQ95604 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 KIAA1328-207ENST00000591619 5881 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 LINC00461-212ENST00000511014 3539 ntTSL 2 BASIC8.74□□□□□ -1.01
HLA-CQ95604 NCAM1-213ENST00000531044 2826 ntTSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 ATMIN-206ENST00000566488 5343 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 NCKAP5-201ENST00000317721 7593 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 NCKAP5-205ENST00000409261 7594 ntAPPRIS P4 TSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 SLC9A9-201ENST00000316549 3627 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 CCDC125-203ENST00000396499 3615 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 BEND6-201ENST00000370745 579 ntTSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 RNU6-876P-201ENST00000391295 104 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AC096664.1-201ENST00000393996 778 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 VN1R33P-201ENST00000411800 887 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AC003080.1-201ENST00000413552 767 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 LINC02028-201ENST00000420947 528 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 GAPDHP55-201ENST00000423136 803 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 OR5W1P-201ENST00000423705 938 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 GTF2IP23-201ENST00000423746 351 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 LINC02088-201ENST00000428134 620 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 MTCO1P3-201ENST00000429327 192 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 AC019055.1-201ENST00000432822 443 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 AL035458.1-201ENST00000433096 585 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 GDI2P2-201ENST00000445131 608 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 PSPHP1-201ENST00000450062 261 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 PPIA-203ENST00000451562 544 ntTSL 2 BASIC8.74□□□□□ -1.01
HLA-CQ95604 OR52E7P-201ENST00000452394 933 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 RPS20P4-201ENST00000461659 355 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 BX890604.1-206ENST00000471090 922 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 PGBD4P1-201ENST00000473644 407 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 RN7SL89P-201ENST00000480252 283 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AC008629.3-201ENST00000505786 586 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 ZNF721-203ENST00000506646 935 ntTSL 2 BASIC8.74□□□□□ -1.01
HLA-CQ95604 MTCO3P9-201ENST00000506989 781 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 AC117473.1-201ENST00000508616 392 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 NACAP5-201ENST00000509863 636 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC8.74□□□□□ -1.01
HLA-CQ95604 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 IGHV3-32-201ENST00000519182 355 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AC067735.1-201ENST00000551152 526 ntTSL 2 BASIC8.74□□□□□ -1.01
HLA-CQ95604 ACTN1-AS1-201ENST00000553944 484 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 AC004825.1-201ENST00000555068 586 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 AC013457.1-201ENST00000556770 1011 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 AC022165.1-201ENST00000568771 596 ntTSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 AC010547.7-201ENST00000570323 333 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AC015853.3-201ENST00000570974 478 ntTSL 4 BASIC8.74□□□□□ -1.01
HLA-CQ95604 LINC00469-203ENST00000579749 583 ntTSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 KCTD2-206ENST00000581589 993 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 SKA2-207ENST00000583380 583 ntTSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 C10orf82-203ENST00000588184 852 ntAPPRIS ALT2 TSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 ZEB2-AS1-206ENST00000602006 572 ntTSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 KC877982.1-201ENST00000602313 470 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AL844908.1-201ENST00000609953 652 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AP000894.4-201ENST00000610185 483 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AC015922.4-201ENST00000612568 690 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AC025287.2-201ENST00000621911 668 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC8.74□□□□□ -1.01
HLA-CQ95604 CU638689.4-203ENST00000625185 785 ntTSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 RPL36AP21-202ENST00000639134 430 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 DYNC2LI1-203ENST00000398823 2903 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 PALM2-AKAP2-202ENST00000374530 7507 ntTSL 2 BASIC8.74□□□□□ -1.01
HLA-CQ95604 THAP9-AS1-204ENST00000504792 2577 ntTSL 2 BASIC8.74□□□□□ -1.01
HLA-CQ95604 CSTF1-201ENST00000217109 4290 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 SUMO2-202ENST00000420826 3190 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 CD59-203ENST00000415002 1878 ntAPPRIS P2 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 ARMC4-201ENST00000305242 3572 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 CCDC80-202ENST00000439685 3557 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 SRP19-204ENST00000505459 2841 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 AC009812.3-201ENST00000523871 3766 ntTSL 4 BASIC8.74□□□□□ -1.01
HLA-CQ95604 SECISBP2L-209ENST00000559471 7176 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 DNAH11-212ENST00000620169 13670 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 TMPRSS11B-201ENST00000332644 2671 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 EIF1AD-201ENST00000312234 2887 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 CSMD1-202ENST00000400186 10938 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 AC007238.1-201ENST00000434096 1741 ntBASIC8.74□□□□□ -1.01
HLA-CQ95604 CSMD1-217ENST00000602723 10938 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.01
HLA-CQ95604 PFKFB1-202ENST00000375006 1929 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 ARL6IP5-201ENST00000273258 2101 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HLA-CQ95604 PAMR1-207ENST00000619888 3142 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms