Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
SYNE1Q8NF91 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 JAML-206ENST00000526620 1383 ntAPPRIS ALT2 TSL 2 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 SNORA7A-201ENST00000384765 139 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 RN7SL870P-201ENST00000460111 296 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC093627.1-201ENST00000465755 877 ntTSL 3 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC005017.1-201ENST00000482002 490 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 DPH5-211ENST00000488176 1034 ntAPPRIS P4 TSL 3 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 OR52H2P-201ENST00000514607 902 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 IGKV3D-34-201ENST00000522638 302 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC002519.2-203ENST00000567043 837 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 MIR3154-201ENST00000577829 84 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC019257.2-201ENST00000605539 497 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC004023.1-201ENST00000561473 1744 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 DIEXF-202ENST00000491415 8446 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 CR1-203ENST00000367051 7469 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 CR1-204ENST00000367052 7469 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 CR1-205ENST00000367053 7469 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 MRPS18C-201ENST00000295491 1643 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 NANOG-201ENST00000229307 5183 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 OXCT1-205ENST00000510634 1441 ntTSL 2 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 TRPM3-212ENST00000396283 3484 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AL121949.2-201ENST00000403446 1548 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 RNA5SP382-201ENST00000363355 112 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 CXADRP1-201ENST00000398098 1095 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 LINC00433-201ENST00000424165 888 ntTSL 2 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 HTATIP2-207ENST00000532081 774 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 DYNLL1P1-201ENST00000595442 269 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 CXADRP3-202ENST00000617265 1100 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 RAB28P4-201ENST00000622233 665 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC006328.2-201ENST00000623198 397 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC012005.2-201ENST00000624333 397 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 BRD7P1-201ENST00000557705 1915 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AL355974.1-201ENST00000618896 1708 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 PPFIA2-216ENST00000549396 5363 ntAPPRIS P4 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 XRCC6P2-201ENST00000457831 1822 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC133552.1-201ENST00000569988 4007 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 RN7SKP38-201ENST00000410782 309 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 RN7SKP205-201ENST00000410999 307 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 PPIAP20-201ENST00000449839 135 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 PPP1R2P6-201ENST00000478565 588 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC022296.2-201ENST00000512424 202 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 HSD3BP3-201ENST00000514706 994 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC068408.1-201ENST00000577406 1144 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC005899.3-201ENST00000580360 271 ntTSL 3 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 WBP1LP11-201ENST00000586141 328 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC007255.2-201ENST00000604053 631 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC139795.3-201ENST00000606358 541 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC017037.4-201ENST00000624526 826 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 DNAH9-203ENST00000454412 13452 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 MAK-202ENST00000354489 3941 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 METTL2B-204ENST00000480046 5743 ntTSL 2 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC2.08□□□□□ -2.08
SYNE1Q8NF91 MIR1275-201ENST00000408770 80 ntBASIC2.08□□□□□ -2.08
SYNE1Q8NF91 AL359885.1-201ENST00000415786 903 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms