Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CREM-203ENST00000344351 1625 ntTSL 2 BASIC10.96□□□□□ -0.66
CUX1P39880 SAGE3P-201ENST00000619800 1635 ntBASIC10.96□□□□□ -0.66
CUX1P39880 SHROOM4-203ENST00000460112 8919 ntTSL 5 BASIC10.95□□□□□ -0.66
CUX1P39880 GPR19-203ENST00000540510 1751 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
CUX1P39880 MTCO1P11-201ENST00000429111 1528 ntBASIC10.95□□□□□ -0.66
CUX1P39880 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
CUX1P39880 C2orf76-203ENST00000409523 747 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CUX1P39880 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC10.95□□□□□ -0.66
CUX1P39880 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
CUX1P39880 AL133351.3-201ENST00000454998 193 ntBASIC10.95□□□□□ -0.66
CUX1P39880 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC10.95□□□□□ -0.66
CUX1P39880 RPL12P31-201ENST00000478433 450 ntBASIC10.95□□□□□ -0.66
CUX1P39880 AC095052.1-201ENST00000509955 863 ntBASIC10.95□□□□□ -0.66
CUX1P39880 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC10.95□□□□□ -0.66
CUX1P39880 IGHV4-55-201ENST00000520889 368 ntBASIC10.95□□□□□ -0.66
CUX1P39880 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC10.95□□□□□ -0.66
CUX1P39880 AC090022.1-201ENST00000546569 311 ntBASIC10.95□□□□□ -0.66
CUX1P39880 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC10.95□□□□□ -0.66
CUX1P39880 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC10.95□□□□□ -0.66
CUX1P39880 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC10.95□□□□□ -0.66
CUX1P39880 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC10.95□□□□□ -0.66
CUX1P39880 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC10.95□□□□□ -0.66
CUX1P39880 LINC02367-201ENST00000567749 4388 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CUX1P39880 AL034417.4-202ENST00000642135 2236 ntBASIC10.95□□□□□ -0.66
CUX1P39880 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC10.95□□□□□ -0.66
CUX1P39880 NECAP1-221ENST00000639955 3479 ntAPPRIS P2 TSL 5 BASIC10.95□□□□□ -0.66
CUX1P39880 HPS5-201ENST00000349215 4491 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CUX1P39880 TNIK-201ENST00000284483 4059 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
CUX1P39880 OPALIN-202ENST00000393870 3578 ntTSL 3 BASIC10.95□□□□□ -0.66
CUX1P39880 TRIM66-201ENST00000299550 9753 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
CUX1P39880 AL359694.2-201ENST00000567753 1615 ntBASIC10.95□□□□□ -0.66
CUX1P39880 TRPM3-212ENST00000396283 3484 ntTSL 5 BASIC10.95□□□□□ -0.66
CUX1P39880 SLC24A1-212ENST00000546330 3246 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
CUX1P39880 SLFN13-209ENST00000533791 4121 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
CUX1P39880 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
CUX1P39880 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CUX1P39880 RN7SKP292-201ENST00000365522 317 ntBASIC10.94□□□□□ -0.66
CUX1P39880 PPCS-201ENST00000372556 984 ntTSL 2 BASIC10.94□□□□□ -0.66
CUX1P39880 BMS1P13-201ENST00000417301 885 ntBASIC10.94□□□□□ -0.66
CUX1P39880 AC023141.3-201ENST00000436698 278 ntBASIC10.94□□□□□ -0.66
CUX1P39880 ATP6V1E1P1-201ENST00000439215 681 ntBASIC10.94□□□□□ -0.66
CUX1P39880 BMS1P10-201ENST00000443754 1120 ntBASIC10.94□□□□□ -0.66
CUX1P39880 KRTAP2-5P-201ENST00000446109 396 ntBASIC10.94□□□□□ -0.66
CUX1P39880 RPL23AP68-201ENST00000480924 445 ntBASIC10.94□□□□□ -0.66
CUX1P39880 OXCT1-205ENST00000510634 1441 ntTSL 2 BASIC10.94□□□□□ -0.66
CUX1P39880 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC10.94□□□□□ -0.66
CUX1P39880 AL591167.1-201ENST00000607321 456 ntBASIC10.94□□□□□ -0.66
CUX1P39880 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
CUX1P39880 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC10.94□□□□□ -0.66
CUX1P39880 AL512652.1-201ENST00000619006 500 ntBASIC10.94□□□□□ -0.66
CUX1P39880 ZNF841-203ENST00000594295 3819 ntAPPRIS P1 TSL 3 BASIC10.94□□□□□ -0.66
CUX1P39880 PTPRB-208ENST00000550358 6583 ntTSL 2 BASIC10.94□□□□□ -0.66
CUX1P39880 ZNF791-202ENST00000446165 6412 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CUX1P39880 COLGALT2-203ENST00000367521 4723 ntTSL 2 BASIC10.94□□□□□ -0.66
CUX1P39880 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CUX1P39880 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
CUX1P39880 AC008467.1-201ENST00000512693 5471 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CUX1P39880 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CUX1P39880 Z99129.4-201ENST00000624649 2435 ntBASIC10.94□□□□□ -0.66
CUX1P39880 KCNMA1-248ENST00000638991 11990 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
CUX1P39880 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
CUX1P39880 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC10.94□□□□□ -0.66
CUX1P39880 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
CUX1P39880 CDK7P1-201ENST00000434574 693 ntBASIC10.94□□□□□ -0.66
CUX1P39880 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC10.94□□□□□ -0.66
CUX1P39880 CST12P-201ENST00000457644 362 ntBASIC10.94□□□□□ -0.66
CUX1P39880 NXT1P1-201ENST00000458481 316 ntBASIC10.94□□□□□ -0.66
CUX1P39880 SNORD46.2-201ENST00000516021 102 ntBASIC10.94□□□□□ -0.66
CUX1P39880 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC10.94□□□□□ -0.66
CUX1P39880 OTX2-203ENST00000554559 715 ntTSL 5 BASIC10.94□□□□□ -0.66
CUX1P39880 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC10.94□□□□□ -0.66
CUX1P39880 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC10.94□□□□□ -0.66
CUX1P39880 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC10.94□□□□□ -0.66
CUX1P39880 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
CUX1P39880 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
CUX1P39880 RNF145-209ENST00000520638 2340 ntTSL 2 BASIC10.93□□□□□ -0.66
CUX1P39880 ABI1-202ENST00000359188 3492 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CUX1P39880 SYNJ1-201ENST00000357345 7059 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
CUX1P39880 SCG3-201ENST00000220478 3315 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CUX1P39880 LINC01234-202ENST00000547963 2088 ntTSL 2 BASIC10.93□□□□□ -0.66
CUX1P39880 HBS1L-205ENST00000367837 7163 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CUX1P39880 PRRG1-201ENST00000378628 4493 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CUX1P39880 OPALIN-203ENST00000393871 3545 ntTSL 2 BASIC10.93□□□□□ -0.66
CUX1P39880 IL24-207ENST00000611909 1621 ntTSL 3 BASIC10.93□□□□□ -0.66
CUX1P39880 CACNB4-270ENST00000638040 2026 ntTSL 5 BASIC10.93□□□□□ -0.66
CUX1P39880 SPATS2L-201ENST00000358677 6156 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CUX1P39880 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
CUX1P39880 RN7SKP81-201ENST00000365603 331 ntBASIC10.93□□□□□ -0.66
CUX1P39880 RNA5SP284-201ENST00000384547 118 ntBASIC10.93□□□□□ -0.66
CUX1P39880 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC10.93□□□□□ -0.66
CUX1P39880 LYPLA1P1-201ENST00000434514 622 ntBASIC10.93□□□□□ -0.66
CUX1P39880 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC10.93□□□□□ -0.66
CUX1P39880 RN7SL643P-201ENST00000471845 291 ntBASIC10.93□□□□□ -0.66
CUX1P39880 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC10.93□□□□□ -0.66
CUX1P39880 AC139272.1-201ENST00000505516 640 ntBASIC10.93□□□□□ -0.66
CUX1P39880 AC131392.1-201ENST00000506490 633 ntBASIC10.93□□□□□ -0.66
CUX1P39880 MTATP6P1-201ENST00000514057 681 ntBASIC10.93□□□□□ -0.66
CUX1P39880 AC027544.3-201ENST00000535082 757 ntBASIC10.93□□□□□ -0.66
CUX1P39880 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC10.93□□□□□ -0.66
CUX1P39880 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC10.93□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 319 ms