Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
COL4A5P29400 RN7SKP281-201ENST00000410472 352 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 AC017035.1-201ENST00000411999 1115 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 MED28P4-201ENST00000433137 572 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
COL4A5P29400 CST12P-201ENST00000457644 362 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 NXT1P1-201ENST00000458481 316 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 AC022415.1-202ENST00000486612 523 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC7.89□□□□□ -1.15
COL4A5P29400 RN7SL104P-201ENST00000498686 293 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 PSMA2P2-201ENST00000504319 686 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 AC004232.1-201ENST00000571388 208 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 GTF2IP6-201ENST00000583143 541 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC7.89□□□□□ -1.15
COL4A5P29400 AC005277.2-201ENST00000617898 390 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC7.89□□□□□ -1.15
COL4A5P29400 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 CALN1-202ENST00000395275 9459 ntAPPRIS ALT1 TSL 5 BASIC7.89□□□□□ -1.15
COL4A5P29400 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
COL4A5P29400 FAT3-206ENST00000533797 7894 ntTSL 2 BASIC7.89□□□□□ -1.15
COL4A5P29400 SYCP1-202ENST00000369522 3522 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 DOCK3-201ENST00000266037 8755 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 ZNF587B-201ENST00000442832 3339 ntTSL 2 BASIC7.89□□□□□ -1.15
COL4A5P29400 AL133243.2-201ENST00000610331 1621 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 GALR1-201ENST00000299727 10044 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 SPTAN1-202ENST00000372731 7889 ntAPPRIS P3 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 EFTUD2-220ENST00000591382 3675 ntAPPRIS P1 TSL 2 BASIC7.89□□□□□ -1.15
COL4A5P29400 AC015871.4-201ENST00000624650 2260 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 VMA21-201ENST00000330374 4717 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 CDH17-202ENST00000441892 2204 ntTSL 2 BASIC7.89□□□□□ -1.15
COL4A5P29400 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
COL4A5P29400 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
COL4A5P29400 RNA5SP346-201ENST00000363541 121 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 RN7SKP292-201ENST00000365522 317 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 RNA5SP284-201ENST00000384547 118 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
COL4A5P29400 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC7.89□□□□□ -1.15
COL4A5P29400 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC7.89□□□□□ -1.15
COL4A5P29400 RPL12P16-201ENST00000431098 498 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 AC023141.3-201ENST00000436698 278 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 RN7SL382P-201ENST00000482631 282 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC7.89□□□□□ -1.15
COL4A5P29400 AC051619.2-201ENST00000559063 397 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC7.89□□□□□ -1.15
COL4A5P29400 RN7SL208P-201ENST00000577964 296 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC7.89□□□□□ -1.15
COL4A5P29400 AC073333.2-201ENST00000603589 769 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 AC130456.6-201ENST00000623745 765 ntBASIC7.89□□□□□ -1.15
COL4A5P29400 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 MTMR10-201ENST00000435680 4961 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL4A5P29400 BMPR1A-201ENST00000372037 11255 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC7.88□□□□□ -1.15
COL4A5P29400 TENM2-205ENST00000519204 9427 ntTSL 5 BASIC7.88□□□□□ -1.15
COL4A5P29400 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 ADGRA3-209ENST00000508133 1572 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 ATP5G3-201ENST00000284727 5484 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 PLXNA2-201ENST00000367033 11444 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 COL25A1-208ENST00000610288 4799 ntTSL 5 BASIC7.88□□□□□ -1.15
COL4A5P29400 IQGAP1-201ENST00000268182 7233 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC7.88□□□□□ -1.15
COL4A5P29400 ADAMTS3-201ENST00000286657 6409 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 MS4A7-202ENST00000358246 2871 ntTSL 3 BASIC7.88□□□□□ -1.15
COL4A5P29400 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 RN7SKP278-201ENST00000410504 342 ntBASIC7.88□□□□□ -1.15
COL4A5P29400 RN7SKP271-201ENST00000410528 320 ntBASIC7.88□□□□□ -1.15
COL4A5P29400 AL663061.1-201ENST00000416625 580 ntBASIC7.88□□□□□ -1.15
COL4A5P29400 OR4D12P-201ENST00000509361 911 ntBASIC7.88□□□□□ -1.15
COL4A5P29400 AC095052.1-201ENST00000509955 863 ntBASIC7.88□□□□□ -1.15
COL4A5P29400 OR5H7P-201ENST00000514084 930 ntBASIC7.88□□□□□ -1.15
COL4A5P29400 RN7SKP238-201ENST00000516483 249 ntBASIC7.88□□□□□ -1.15
COL4A5P29400 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC7.88□□□□□ -1.15
COL4A5P29400 AC016144.1-201ENST00000548175 1087 ntBASIC7.88□□□□□ -1.15
COL4A5P29400 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC7.88□□□□□ -1.15
COL4A5P29400 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC7.88□□□□□ -1.15
COL4A5P29400 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC7.88□□□□□ -1.15
COL4A5P29400 AL356986.1-201ENST00000604085 341 ntBASIC7.88□□□□□ -1.15
COL4A5P29400 AL157899.1-201ENST00000604110 936 ntBASIC7.88□□□□□ -1.15
COL4A5P29400 AL354718.1-201ENST00000619764 589 ntBASIC7.88□□□□□ -1.15
COL4A5P29400 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC7.88□□□□□ -1.15
COL4A5P29400 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC7.88□□□□□ -1.15
COL4A5P29400 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 ZNF540-206ENST00000589117 2349 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL4A5P29400 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC7.88□□□□□ -1.15
COL4A5P29400 AL353763.2-201ENST00000623489 1903 ntBASIC7.88□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms