Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 USP17L26-202ENST00000610514 1677 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 USP17L20-202ENST00000613757 1677 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 USP17L11-202ENST00000613973 1677 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 USP17L17-202ENST00000614762 1677 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 USP17L19-202ENST00000615989 1677 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 USP17L13-202ENST00000616303 1677 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 USP17L18-202ENST00000619296 1677 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 USP17L25-202ENST00000621472 1677 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 USP17L22-202ENST00000622009 1677 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 USP17L24-202ENST00000622713 1677 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 AP005230.1-205ENST00000639316 2015 ntTSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 ZNF185-203ENST00000324823 3597 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 AC023154.1-201ENST00000510351 2517 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 C2orf42-205ENST00000420306 2193 ntAPPRIS P1 TSL 2 BASIC7.83□□□□□ -1.16
MSX1P28360 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 TOP1-201ENST00000361337 3738 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 SMG7-202ENST00000367537 5970 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 WIPF3-203ENST00000409290 4002 ntAPPRIS P2 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 FCAR-202ENST00000353758 537 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 RNA5SP145-201ENST00000363124 125 ntBASIC7.83□□□□□ -1.16
MSX1P28360 RNU4-91P-201ENST00000364778 135 ntBASIC7.83□□□□□ -1.16
MSX1P28360 MIR181A1-201ENST00000385026 110 ntBASIC7.83□□□□□ -1.16
MSX1P28360 RPL17P50-201ENST00000396131 546 ntBASIC7.83□□□□□ -1.16
MSX1P28360 DNAJC19P6-201ENST00000401853 280 ntBASIC7.83□□□□□ -1.16
MSX1P28360 SYNE1-AS1-201ENST00000412161 553 ntTSL 2 BASIC7.83□□□□□ -1.16
MSX1P28360 AL122008.2-201ENST00000412915 570 ntBASIC7.83□□□□□ -1.16
MSX1P28360 AC009110.1-201ENST00000415422 558 ntTSL 4 BASIC7.83□□□□□ -1.16
MSX1P28360 LINC00316-201ENST00000416722 455 ntTSL 2 BASIC7.83□□□□□ -1.16
MSX1P28360 Z97055.1-201ENST00000419730 712 ntBASIC7.83□□□□□ -1.16
MSX1P28360 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC7.83□□□□□ -1.16
MSX1P28360 SNHG17-204ENST00000423536 517 ntTSL 2 BASIC7.83□□□□□ -1.16
MSX1P28360 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC7.83□□□□□ -1.16
MSX1P28360 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC7.83□□□□□ -1.16
MSX1P28360 RPS28P8-201ENST00000435020 208 ntBASIC7.83□□□□□ -1.16
MSX1P28360 AL023584.1-201ENST00000437067 349 ntTSL 3 BASIC7.83□□□□□ -1.16
MSX1P28360 DNAJC19P4-201ENST00000440115 345 ntBASIC7.83□□□□□ -1.16
MSX1P28360 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 AL353194.1-201ENST00000451507 441 ntTSL 2 BASIC7.83□□□□□ -1.16
MSX1P28360 RPL21P134-201ENST00000453468 483 ntBASIC7.83□□□□□ -1.16
MSX1P28360 AL133232.1-201ENST00000458293 483 ntTSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 THUMPD3-AS1-205ENST00000481221 683 ntTSL 3 BASIC7.83□□□□□ -1.16
MSX1P28360 PFN2-209ENST00000481275 560 ntTSL 4 BASIC7.83□□□□□ -1.16
MSX1P28360 AC068042.1-201ENST00000482222 1148 ntBASIC7.83□□□□□ -1.16
MSX1P28360 AC073842.2-201ENST00000494221 572 ntTSL 4 BASIC7.83□□□□□ -1.16
MSX1P28360 AC008628.2-201ENST00000502605 298 ntBASIC7.83□□□□□ -1.16
MSX1P28360 AC112184.1-201ENST00000505179 312 ntBASIC7.83□□□□□ -1.16
MSX1P28360 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 C4orf19-203ENST00000508175 828 ntTSL 3 BASIC7.83□□□□□ -1.16
MSX1P28360 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC7.83□□□□□ -1.16
MSX1P28360 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC7.83□□□□□ -1.16
MSX1P28360 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC7.83□□□□□ -1.16
MSX1P28360 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC7.83□□□□□ -1.16
MSX1P28360 MAL2-205ENST00000521048 575 ntTSL 4 BASIC7.83□□□□□ -1.16
MSX1P28360 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC7.83□□□□□ -1.16
MSX1P28360 AP000781.1-201ENST00000534162 311 ntTSL 3 BASIC7.83□□□□□ -1.16
MSX1P28360 SLC25A51P2-201ENST00000535708 889 ntBASIC7.83□□□□□ -1.16
MSX1P28360 CCDC60-204ENST00000539847 581 ntAPPRIS ALT2 TSL 3 BASIC7.83□□□□□ -1.16
MSX1P28360 AL138976.2-201ENST00000563989 694 ntBASIC7.83□□□□□ -1.16
MSX1P28360 MRPL45P2-203ENST00000573318 473 ntBASIC7.83□□□□□ -1.16
MSX1P28360 LINC01255-203ENST00000587189 591 ntTSL 4 BASIC7.83□□□□□ -1.16
MSX1P28360 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 AL021878.2-201ENST00000602718 399 ntBASIC7.83□□□□□ -1.16
MSX1P28360 AC018737.1-201ENST00000603900 204 ntBASIC7.83□□□□□ -1.16
MSX1P28360 LINC00837-203ENST00000608061 555 ntTSL 4 BASIC7.83□□□□□ -1.16
MSX1P28360 AL354760.1-201ENST00000608357 643 ntBASIC7.83□□□□□ -1.16
MSX1P28360 LINC01396-201ENST00000609099 527 ntTSL 3 BASIC7.83□□□□□ -1.16
MSX1P28360 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 AC091304.9-201ENST00000612091 226 ntBASIC7.83□□□□□ -1.16
MSX1P28360 ELMO2P1-202ENST00000614283 794 ntBASIC7.83□□□□□ -1.16
MSX1P28360 CD200R1L-205ENST00000617549 762 ntAPPRIS ALT2 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 AC073254.1-206ENST00000617813 907 ntTSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 FER-210ENST00000628534 558 ntTSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 AC108477.1-201ENST00000636764 526 ntTSL 4 BASIC7.83□□□□□ -1.16
MSX1P28360 OR7A2P-202ENST00000641312 1219 ntBASIC7.83□□□□□ -1.16
MSX1P28360 TRPS1-209ENST00000519674 3116 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 TDRD9-201ENST00000339063 3447 ntTSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 PTPDC1-201ENST00000288976 4398 ntAPPRIS P4 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 AL355103.1-201ENST00000557246 2226 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 MXRA7-207ENST00000592148 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 DCAF8-203ENST00000368074 3824 ntAPPRIS P1 TSL 5 BASIC7.83□□□□□ -1.16
MSX1P28360 MRO-211ENST00000610511 5257 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 MSL3P1-201ENST00000438684 2032 ntTSL 2 BASIC7.83□□□□□ -1.16
MSX1P28360 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 SLC24A2-201ENST00000286344 2170 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 LYZ-201ENST00000261267 1530 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 CD200-203ENST00000473539 1524 ntTSL 2 BASIC7.83□□□□□ -1.16
MSX1P28360 THG1L-201ENST00000231198 3107 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 AC084782.1-201ENST00000564401 2465 ntBASIC7.83□□□□□ -1.16
MSX1P28360 TTC39DP-201ENST00000416781 1688 ntBASIC7.83□□□□□ -1.16
MSX1P28360 ZMYND11-216ENST00000602682 1687 ntTSL 5 BASIC7.83□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms