Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC026124.1-201ENST00000545709 3457 ntTSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 ING3-204ENST00000431467 1447 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 ALG13-204ENST00000436609 3812 ntTSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 TDP1-203ENST00000393454 2068 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
MSX1P28360 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 PTPN3-201ENST00000262539 6832 ntTSL 5 BASIC7.85□□□□□ -1.15
MSX1P28360 LOXHD1-212ENST00000582408 3755 ntTSL 2 BASIC7.85□□□□□ -1.15
MSX1P28360 TBC1D5-219ENST00000446818 3124 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
MSX1P28360 CARD8-216ENST00000520153 2617 ntAPPRIS P3 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC7.84□□□□□ -1.15
MSX1P28360 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 ZSCAN32-201ENST00000304926 3027 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 USP48-203ENST00000374732 3037 ntTSL 2 BASIC7.84□□□□□ -1.15
MSX1P28360 LINC01427-204ENST00000635299 1978 ntTSL 5 BASIC7.84□□□□□ -1.15
MSX1P28360 CTNNA2-217ENST00000540488 2792 ntTSL 5 BASIC7.84□□□□□ -1.15
MSX1P28360 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 NTRK3-221ENST00000629765 2714 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 ARMC8-215ENST00000471453 2910 ntTSL 2 BASIC7.84□□□□□ -1.15
MSX1P28360 C8orf44-SGK3-201ENST00000519289 2949 ntAPPRIS P1 TSL 2 BASIC7.84□□□□□ -1.15
MSX1P28360 RNF24-203ENST00000432261 3149 ntTSL 5 BASIC7.84□□□□□ -1.15
MSX1P28360 HNRNPC-201ENST00000336053 3301 ntTSL 2 BASIC7.84□□□□□ -1.15
MSX1P28360 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC7.84□□□□□ -1.15
MSX1P28360 TGFB2-201ENST00000366929 5053 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 AL354993.1-201ENST00000436286 3280 ntTSL 4 BASIC7.84□□□□□ -1.15
MSX1P28360 AL121936.1-201ENST00000641660 2884 ntBASIC7.84□□□□□ -1.15
MSX1P28360 LMCD1-AS1-203ENST00000441861 2683 ntTSL 2 BASIC7.84□□□□□ -1.15
MSX1P28360 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
MSX1P28360 OR2T10-201ENST00000330500 1049 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
MSX1P28360 OR2G6-201ENST00000343414 1049 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
MSX1P28360 snoZ40.1-201ENST00000364540 72 ntBASIC7.84□□□□□ -1.15
MSX1P28360 Y_RNA.256-201ENST00000364594 104 ntBASIC7.84□□□□□ -1.15
MSX1P28360 MIR146B-201ENST00000365699 73 ntBASIC7.84□□□□□ -1.15
MSX1P28360 TRAV35-201ENST00000390462 330 ntBASIC7.84□□□□□ -1.15
MSX1P28360 FCAR-206ENST00000391724 762 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 AL590002.1-201ENST00000406554 418 ntBASIC7.84□□□□□ -1.15
MSX1P28360 AC116050.1-206ENST00000423774 213 ntBASIC7.84□□□□□ -1.15
MSX1P28360 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC7.84□□□□□ -1.15
MSX1P28360 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC7.84□□□□□ -1.15
MSX1P28360 AL050341.1-201ENST00000447743 313 ntBASIC7.84□□□□□ -1.15
MSX1P28360 RPL36AP33-201ENST00000450395 310 ntBASIC7.84□□□□□ -1.15
MSX1P28360 PPP1R8P1-201ENST00000452549 1044 ntBASIC7.84□□□□□ -1.15
MSX1P28360 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC7.84□□□□□ -1.15
MSX1P28360 SNX18P8-201ENST00000455120 874 ntBASIC7.84□□□□□ -1.15
MSX1P28360 CCNJP2-201ENST00000457810 1163 ntBASIC7.84□□□□□ -1.15
MSX1P28360 RN7SL107P-201ENST00000478127 283 ntBASIC7.84□□□□□ -1.15
MSX1P28360 RPL7P18-201ENST00000478965 734 ntBASIC7.84□□□□□ -1.15
MSX1P28360 AC104164.4-201ENST00000483456 493 ntBASIC7.84□□□□□ -1.15
MSX1P28360 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC7.84□□□□□ -1.15
MSX1P28360 TCP11X3P-202ENST00000514289 1254 ntBASIC7.84□□□□□ -1.15
MSX1P28360 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC7.84□□□□□ -1.15
MSX1P28360 IGHVIII-38-1-201ENST00000521454 282 ntBASIC7.84□□□□□ -1.15
MSX1P28360 IGKV2OR22-4-201ENST00000523309 367 ntBASIC7.84□□□□□ -1.15
MSX1P28360 FABP5P7-201ENST00000524732 405 ntBASIC7.84□□□□□ -1.15
MSX1P28360 AP003033.2-201ENST00000528901 805 ntBASIC7.84□□□□□ -1.15
MSX1P28360 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC7.84□□□□□ -1.15
MSX1P28360 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC7.84□□□□□ -1.15
MSX1P28360 AL121839.1-201ENST00000556233 1185 ntBASIC7.84□□□□□ -1.15
MSX1P28360 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC7.84□□□□□ -1.15
MSX1P28360 AC009154.1-201ENST00000565822 508 ntTSL 3 BASIC7.84□□□□□ -1.15
MSX1P28360 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC7.84□□□□□ -1.15
MSX1P28360 AC126773.1-201ENST00000569654 547 ntTSL 4 BASIC7.84□□□□□ -1.15
MSX1P28360 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC7.84□□□□□ -1.15
MSX1P28360 AC091132.5-205ENST00000585761 560 ntTSL 4 BASIC7.84□□□□□ -1.15
MSX1P28360 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC7.84□□□□□ -1.15
MSX1P28360 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC7.84□□□□□ -1.15
MSX1P28360 ZSCAN30-210ENST00000601405 510 ntTSL 5 BASIC7.84□□□□□ -1.15
MSX1P28360 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC7.84□□□□□ -1.15
MSX1P28360 AL021808.1-201ENST00000604325 1117 ntBASIC7.84□□□□□ -1.15
MSX1P28360 AC090578.1-201ENST00000604955 591 ntBASIC7.84□□□□□ -1.15
MSX1P28360 AC073218.2-201ENST00000606468 295 ntTSL 5 BASIC7.84□□□□□ -1.15
MSX1P28360 AC009502.1-202ENST00000606673 602 ntTSL 3 BASIC7.84□□□□□ -1.15
MSX1P28360 AL589743.7-201ENST00000612637 233 ntBASIC7.84□□□□□ -1.15
MSX1P28360 AC026951.2-201ENST00000613847 241 ntBASIC7.84□□□□□ -1.15
MSX1P28360 LRRC77P-213ENST00000637727 880 ntBASIC7.84□□□□□ -1.15
MSX1P28360 BTN3A3-201ENST00000244519 3002 ntAPPRIS P4 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 PLP1-223ENST00000621218 3001 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC7.84□□□□□ -1.15
MSX1P28360 LINC00939-202ENST00000507313 2819 ntTSL 2 BASIC7.84□□□□□ -1.15
MSX1P28360 ADA2-204ENST00000399839 3986 ntAPPRIS P3 TSL 5 BASIC7.84□□□□□ -1.15
MSX1P28360 MTA3-205ENST00000407270 2202 ntAPPRIS P2 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 TGM4-201ENST00000296125 3388 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 COPB1-202ENST00000439561 3382 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 AC005863.1-201ENST00000379640 2998 ntTSL 2 BASIC7.84□□□□□ -1.15
MSX1P28360 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 ZNF846-202ENST00000586293 1621 ntTSL 1 (best) BASIC7.84□□□□□ -1.15
MSX1P28360 CXorf57-201ENST00000372544 3607 ntTSL 2 BASIC7.84□□□□□ -1.15
MSX1P28360 AC104447.1-201ENST00000624214 2124 ntBASIC7.84□□□□□ -1.16
MSX1P28360 CLEC1A-201ENST00000315330 2685 ntAPPRIS P3 TSL 1 (best) BASIC7.84□□□□□ -1.16
MSX1P28360 ZNF615-208ENST00000598071 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC7.84□□□□□ -1.16
MSX1P28360 TMEM87A-203ENST00000448392 3049 ntTSL 1 (best) BASIC7.84□□□□□ -1.16
MSX1P28360 OR2A1-202ENST00000641044 4632 ntAPPRIS P1 BASIC7.83□□□□□ -1.16
MSX1P28360 BCAS1-202ENST00000395961 3303 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 JAZF1-AS1-202ENST00000444500 3684 ntTSL 1 (best) BASIC7.83□□□□□ -1.16
MSX1P28360 CAGE1-202ENST00000338150 2771 ntAPPRIS ALT2 TSL 2 BASIC7.83□□□□□ -1.16
MSX1P28360 ZNF667-206ENST00000591790 5250 ntTSL 2 BASIC7.83□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms