Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 EIF4A1P5-201ENST00000428062 1095 ntBASIC6.51□□□□□ -1.37
SOX3P41225 STARD13-IT1-201ENST00000456087 452 ntTSL 5 BASIC6.51□□□□□ -1.37
SOX3P41225 BX323845.2-201ENST00000458382 234 ntBASIC6.51□□□□□ -1.37
SOX3P41225 AC239804.1-201ENST00000466343 869 ntTSL 5 BASIC6.51□□□□□ -1.37
SOX3P41225 RN7SL160P-201ENST00000468558 284 ntBASIC6.51□□□□□ -1.37
SOX3P41225 PGBD4P1-201ENST00000473644 407 ntBASIC6.51□□□□□ -1.37
SOX3P41225 AL079303.1-201ENST00000486611 463 ntBASIC6.51□□□□□ -1.37
SOX3P41225 AC073842.2-201ENST00000494221 572 ntTSL 4 BASIC6.51□□□□□ -1.37
SOX3P41225 AC023818.1-201ENST00000498379 384 ntBASIC6.51□□□□□ -1.37
SOX3P41225 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC6.51□□□□□ -1.37
SOX3P41225 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC6.51□□□□□ -1.37
SOX3P41225 AC008868.1-201ENST00000509786 737 ntBASIC6.51□□□□□ -1.37
SOX3P41225 AC096661.1-201ENST00000515870 822 ntBASIC6.51□□□□□ -1.37
SOX3P41225 SCARNA6-201ENST00000515982 265 ntBASIC6.51□□□□□ -1.37
SOX3P41225 SSU72P6-201ENST00000532644 488 ntBASIC6.51□□□□□ -1.37
SOX3P41225 FCF1-203ENST00000553615 954 ntTSL 3 BASIC6.51□□□□□ -1.37
SOX3P41225 LINC01146-206ENST00000556684 361 ntTSL 3 BASIC6.51□□□□□ -1.37
SOX3P41225 AL109628.1-201ENST00000556877 366 ntBASIC6.51□□□□□ -1.37
SOX3P41225 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC6.51□□□□□ -1.37
SOX3P41225 IQCK-206ENST00000564186 882 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
SOX3P41225 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC6.51□□□□□ -1.37
SOX3P41225 AC063962.1-201ENST00000608199 521 ntBASIC6.51□□□□□ -1.37
SOX3P41225 MIR6774-201ENST00000614651 70 ntBASIC6.51□□□□□ -1.37
SOX3P41225 AC091059.2-201ENST00000623355 614 ntBASIC6.51□□□□□ -1.37
SOX3P41225 AC005355.2-201ENST00000625064 484 ntBASIC6.51□□□□□ -1.37
SOX3P41225 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC6.51□□□□□ -1.37
SOX3P41225 AC002115.2-201ENST00000640449 603 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
SOX3P41225 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SOX3P41225 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SOX3P41225 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SOX3P41225 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SOX3P41225 OR2A3P-202ENST00000641249 1776 ntBASIC6.51□□□□□ -1.37
SOX3P41225 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.51□□□□□ -1.37
SOX3P41225 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SOX3P41225 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SOX3P41225 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SOX3P41225 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SOX3P41225 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 AL355306.2-201ENST00000635570 1542 ntTSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC6.5□□□□□ -1.37
SOX3P41225 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 GRIK1-202ENST00000389124 2712 ntTSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 AP000866.6-201ENST00000638898 3579 ntBASIC6.5□□□□□ -1.37
SOX3P41225 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 CDY10P-201ENST00000452415 1567 ntBASIC6.5□□□□□ -1.37
SOX3P41225 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
SOX3P41225 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 HESX1-201ENST00000295934 981 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 RNU6-1017P-201ENST00000363613 106 ntBASIC6.5□□□□□ -1.37
SOX3P41225 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
SOX3P41225 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC6.5□□□□□ -1.37
SOX3P41225 SNRPEP5-201ENST00000425442 278 ntBASIC6.5□□□□□ -1.37
SOX3P41225 CHCHD3P1-201ENST00000425516 676 ntBASIC6.5□□□□□ -1.37
SOX3P41225 SNX19-202ENST00000426933 888 ntTSL 2 BASIC6.5□□□□□ -1.37
SOX3P41225 AL121916.1-201ENST00000429405 308 ntBASIC6.5□□□□□ -1.37
SOX3P41225 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 PRDX1P1-201ENST00000449329 596 ntBASIC6.5□□□□□ -1.37
SOX3P41225 AL445228.1-201ENST00000449525 333 ntTSL 3 BASIC6.5□□□□□ -1.37
SOX3P41225 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 USP9YP2-201ENST00000504503 1000 ntBASIC6.5□□□□□ -1.37
SOX3P41225 USP9YP1-201ENST00000513521 1002 ntBASIC6.5□□□□□ -1.37
SOX3P41225 DCAF13P2-201ENST00000514188 555 ntBASIC6.5□□□□□ -1.37
SOX3P41225 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC6.5□□□□□ -1.37
SOX3P41225 AP000755.1-201ENST00000527100 507 ntTSL 3 BASIC6.5□□□□□ -1.37
SOX3P41225 AC079866.1-201ENST00000534985 1220 ntBASIC6.5□□□□□ -1.37
SOX3P41225 AC023161.1-201ENST00000549532 420 ntTSL 3 BASIC6.5□□□□□ -1.37
SOX3P41225 AL135978.1-201ENST00000553618 1266 ntBASIC6.5□□□□□ -1.37
SOX3P41225 ULK4P1-202ENST00000565174 503 ntBASIC6.5□□□□□ -1.37
SOX3P41225 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 AC096708.2-201ENST00000577676 512 ntBASIC6.5□□□□□ -1.37
SOX3P41225 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 AC005753.1-201ENST00000623837 618 ntBASIC6.5□□□□□ -1.37
SOX3P41225 AL049541.2-201ENST00000626377 555 ntBASIC6.5□□□□□ -1.37
SOX3P41225 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.5□□□□□ -1.37
SOX3P41225 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
SOX3P41225 AC020978.6-201ENST00000571197 3177 ntBASIC6.5□□□□□ -1.37
SOX3P41225 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
SOX3P41225 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.5□□□□□ -1.37
SOX3P41225 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms