Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 BLNK-203ENST00000413476 1599 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AL096816.1-201ENST00000623300 2920 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 RSRC1-203ENST00000464171 2411 ntTSL 5 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 Z99129.4-201ENST00000624649 2435 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 CAST-228ENST00000509903 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 RNF146-210ENST00000608991 2169 ntAPPRIS P3 TSL 4 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 CFHR5-201ENST00000256785 2810 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 E2F8-201ENST00000250024 3240 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 SIRPG-AS1-202ENST00000456177 2795 ntTSL 2 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 RNU6-1017P-201ENST00000363613 106 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 RN7SKP250-201ENST00000363924 321 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 CFAP61-203ENST00000377293 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 RPLP1P10-201ENST00000413972 339 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 RPL18AP14-201ENST00000417685 526 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AL596268.1-201ENST00000427910 1048 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AC007365.2-201ENST00000428806 458 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 RPL5P10-201ENST00000445207 894 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 NUCKS1P1-201ENST00000452067 703 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 PDE4DIP-208ENST00000464103 1055 ntTSL 5 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 RPL29P23-201ENST00000486188 442 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 RNA5SP473-201ENST00000516402 125 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AC084851.2-201ENST00000530377 364 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 PSMA3-AS1-206ENST00000555037 446 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AL132640.1-201ENST00000559594 619 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AC096708.2-201ENST00000577676 512 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 SIGLECL1-205ENST00000597824 870 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 MIR6503-201ENST00000622884 86 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 SEC23IP-208ENST00000543134 1461 ntTSL 5 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 HUS1-201ENST00000258774 2935 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AP003119.3-201ENST00000566747 4192 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 ZNF214-201ENST00000278314 2681 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 LRAT-206ENST00000507827 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 AC090771.1-201ENST00000585803 1618 ntBASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 ZNF658-206ENST00000621410 4025 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 TRIM6-201ENST00000278302 3217 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 CCDC148-AS1-201ENST00000412781 795 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 LINC01393-202ENST00000435981 1187 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 AC083855.1-201ENST00000440041 258 ntBASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 LINC01638-202ENST00000444114 637 ntTSL 2 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 SDHCP3-201ENST00000445371 506 ntBASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 IGHVII-60-1-201ENST00000519079 256 ntBASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 AC116917.1-201ENST00000520558 305 ntBASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 ACER3-213ENST00000533873 929 ntTSL 2 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 CBLN2-203ENST00000581073 537 ntTSL 4 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 RACK1-235ENST00000626067 564 ntTSL 2 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 AL390036.1-203ENST00000635340 894 ntTSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 CDY19P-201ENST00000411668 1613 ntBASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 CDY18P-201ENST00000438294 1609 ntBASIC7.07□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms