Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TRBV9-201ENST00000390363 390 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
CDX1P47902 PTMAP8-201ENST00000397729 342 ntBASIC5.84□□□□□ -1.47
CDX1P47902 NUS1P4-201ENST00000401550 585 ntBASIC5.84□□□□□ -1.47
CDX1P47902 RN7SKP236-201ENST00000410635 284 ntBASIC5.84□□□□□ -1.47
CDX1P47902 GSTA10P-201ENST00000412182 576 ntBASIC5.84□□□□□ -1.47
CDX1P47902 ALDH7A1P4-201ENST00000412255 178 ntBASIC5.84□□□□□ -1.47
CDX1P47902 CASKP1-201ENST00000412870 582 ntBASIC5.84□□□□□ -1.47
CDX1P47902 LINC01715-201ENST00000420776 624 ntTSL 2 BASIC5.84□□□□□ -1.47
CDX1P47902 GRPEL2P2-201ENST00000421856 670 ntBASIC5.84□□□□□ -1.47
CDX1P47902 CLIC4P3-201ENST00000422221 752 ntBASIC5.84□□□□□ -1.47
CDX1P47902 RPL6P2-201ENST00000425480 783 ntBASIC5.84□□□□□ -1.47
CDX1P47902 BX119904.3-201ENST00000428194 957 ntBASIC5.84□□□□□ -1.47
CDX1P47902 PTCSC2-201ENST00000430058 204 ntTSL 2 BASIC5.84□□□□□ -1.47
CDX1P47902 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC5.84□□□□□ -1.47
CDX1P47902 NQO1-204ENST00000439109 924 ntTSL 2 BASIC5.84□□□□□ -1.47
CDX1P47902 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CDX1P47902 AL157385.1-201ENST00000446973 268 ntBASIC5.84□□□□□ -1.47
CDX1P47902 AC092421.1-201ENST00000448148 418 ntBASIC5.84□□□□□ -1.47
CDX1P47902 FCF1P7-201ENST00000451185 558 ntBASIC5.84□□□□□ -1.47
CDX1P47902 AC112225.1-201ENST00000508230 297 ntBASIC5.84□□□□□ -1.47
CDX1P47902 RNU6-1334P-201ENST00000516032 105 ntBASIC5.84□□□□□ -1.47
CDX1P47902 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC5.84□□□□□ -1.47
CDX1P47902 AC087277.1-201ENST00000529910 535 ntTSL 3 BASIC5.84□□□□□ -1.47
CDX1P47902 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.84□□□□□ -1.47
CDX1P47902 AC115676.1-201ENST00000538416 329 ntTSL 3 BASIC5.84□□□□□ -1.47
CDX1P47902 PCED1B-AS1-207ENST00000551432 522 ntTSL 5 BASIC5.84□□□□□ -1.47
CDX1P47902 AL358334.3-201ENST00000557343 535 ntTSL 3 BASIC5.84□□□□□ -1.47
CDX1P47902 NR2F2-AS1-205ENST00000559505 1005 ntTSL 5 BASIC5.84□□□□□ -1.47
CDX1P47902 AC091304.5-201ENST00000568969 158 ntBASIC5.84□□□□□ -1.47
CDX1P47902 AC011447.3-202ENST00000593655 555 ntTSL 4 BASIC5.84□□□□□ -1.47
CDX1P47902 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC5.84□□□□□ -1.47
CDX1P47902 MIR205HG-210ENST00000603283 455 ntTSL 3 BASIC5.84□□□□□ -1.47
CDX1P47902 AL589743.4-201ENST00000610763 586 ntTSL 5 BASIC5.84□□□□□ -1.47
CDX1P47902 MIR7162-201ENST00000611134 69 ntBASIC5.84□□□□□ -1.47
CDX1P47902 RN7SL680P-201ENST00000620379 299 ntBASIC5.84□□□□□ -1.47
CDX1P47902 SMIM11B-203ENST00000622934 1193 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CDX1P47902 AC106795.5-201ENST00000623288 454 ntBASIC5.84□□□□□ -1.47
CDX1P47902 AC073857.1-201ENST00000625082 1054 ntBASIC5.84□□□□□ -1.47
CDX1P47902 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.84□□□□□ -1.47
CDX1P47902 OAZ3-211ENST00000639906 708 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.47
CDX1P47902 AL078595.2-201ENST00000605309 1780 ntBASIC5.84□□□□□ -1.47
CDX1P47902 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.84□□□□□ -1.47
CDX1P47902 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CDX1P47902 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CDX1P47902 OR2H2-202ENST00000641840 3061 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
CDX1P47902 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
CDX1P47902 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.84□□□□□ -1.47
CDX1P47902 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC5.84□□□□□ -1.48
CDX1P47902 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.84□□□□□ -1.48
CDX1P47902 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
CDX1P47902 AL132656.3-201ENST00000606384 1595 ntBASIC5.84□□□□□ -1.48
CDX1P47902 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
CDX1P47902 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.84□□□□□ -1.48
CDX1P47902 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
CDX1P47902 FKTN-202ENST00000357998 2404 ntTSL 5 BASIC5.84□□□□□ -1.48
CDX1P47902 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.84□□□□□ -1.48
CDX1P47902 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC5.83□□□□□ -1.48
CDX1P47902 SFR1-201ENST00000369727 1438 ntAPPRIS P4 TSL 2 BASIC5.83□□□□□ -1.48
CDX1P47902 ADAM7-203ENST00000441335 1417 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CDX1P47902 DNAAF4-203ENST00000448430 1445 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CDX1P47902 LRRC37A12P-201ENST00000454917 1801 ntBASIC5.83□□□□□ -1.48
CDX1P47902 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.83□□□□□ -1.48
CDX1P47902 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CDX1P47902 OR10AD1-201ENST00000310248 1305 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
CDX1P47902 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
CDX1P47902 RNA5SP260-201ENST00000363849 111 ntBASIC5.83□□□□□ -1.48
CDX1P47902 GRXCR1-201ENST00000399770 991 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CDX1P47902 NDUFV2-202ENST00000400033 942 ntTSL 3 BASIC5.83□□□□□ -1.48
CDX1P47902 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC5.83□□□□□ -1.48
CDX1P47902 SNX18P13-201ENST00000412442 529 ntBASIC5.83□□□□□ -1.48
CDX1P47902 AC004986.1-201ENST00000414855 607 ntBASIC5.83□□□□□ -1.48
CDX1P47902 LINC00159-202ENST00000414877 428 ntTSL 4 BASIC5.83□□□□□ -1.48
CDX1P47902 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC5.83□□□□□ -1.48
CDX1P47902 AC020983.1-201ENST00000417063 543 ntBASIC5.83□□□□□ -1.48
CDX1P47902 AL109924.2-201ENST00000419800 934 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CDX1P47902 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
CDX1P47902 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC5.83□□□□□ -1.48
CDX1P47902 HMGB2-202ENST00000438704 1032 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CDX1P47902 SEPT7P2-208ENST00000444755 505 ntTSL 3 BASIC5.83□□□□□ -1.48
CDX1P47902 LIN28AP2-201ENST00000445283 458 ntBASIC5.83□□□□□ -1.48
CDX1P47902 GTF2F2P2-201ENST00000445825 721 ntBASIC5.83□□□□□ -1.48
CDX1P47902 NPPA-AS1-202ENST00000446542 1032 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CDX1P47902 OR52I1-201ENST00000450052 1050 ntBASIC5.83□□□□□ -1.48
CDX1P47902 OR7E62P-201ENST00000456741 477 ntBASIC5.83□□□□□ -1.48
CDX1P47902 RPL12P40-201ENST00000467028 488 ntBASIC5.83□□□□□ -1.48
CDX1P47902 TRBV8-1-201ENST00000481590 279 ntBASIC5.83□□□□□ -1.48
CDX1P47902 PPP1R11P1-201ENST00000486095 376 ntBASIC5.83□□□□□ -1.48
CDX1P47902 CYB5A-204ENST00000494131 776 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CDX1P47902 RN7SL104P-201ENST00000498686 293 ntBASIC5.83□□□□□ -1.48
CDX1P47902 PABPC1P1-201ENST00000506347 591 ntBASIC5.83□□□□□ -1.48
CDX1P47902 AC098487.1-204ENST00000506972 610 ntTSL 3 BASIC5.83□□□□□ -1.48
CDX1P47902 AC110760.2-202ENST00000507517 946 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CDX1P47902 AC017007.5-201ENST00000511590 874 ntTSL 2 BASIC5.83□□□□□ -1.48
CDX1P47902 XAGE1B-205ENST00000518075 472 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
CDX1P47902 AC026979.2-201ENST00000523733 583 ntTSL 5 BASIC5.83□□□□□ -1.48
CDX1P47902 AC009869.1-201ENST00000530418 528 ntTSL 4 BASIC5.83□□□□□ -1.48
CDX1P47902 AC078950.1-201ENST00000538349 550 ntTSL 4 BASIC5.83□□□□□ -1.48
CDX1P47902 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.83□□□□□ -1.48
CDX1P47902 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
CDX1P47902 AC044860.3-201ENST00000559957 368 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms