Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 AC245052.3-201ENST00000450182 901 ntBASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USH1CQ9Y6N9 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 MIR572-201ENST00000384983 95 ntBASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USH1CQ9Y6N9 BX119927.1-201ENST00000636596 1552 ntBASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 AC135279.3-201ENST00000610945 1311 ntBASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 AL138781.2-201ENST00000617896 1843 ntBASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 AC116050.2-201ENST00000612102 1779 ntBASIC19.78■□□□□ 0.76
USH1CQ9Y6N9 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.77■□□□□ 0.76
USH1CQ9Y6N9 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
USH1CQ9Y6N9 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
USH1CQ9Y6N9 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.77■□□□□ 0.76
USH1CQ9Y6N9 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USH1CQ9Y6N9 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.77■□□□□ 0.76
USH1CQ9Y6N9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.77■□□□□ 0.76
USH1CQ9Y6N9 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
USH1CQ9Y6N9 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
USH1CQ9Y6N9 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
USH1CQ9Y6N9 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
USH1CQ9Y6N9 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.75
USH1CQ9Y6N9 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.77■□□□□ 0.75
USH1CQ9Y6N9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
USH1CQ9Y6N9 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms