Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 AC063952.2-201ENST00000498792 1227 ntBASIC25.26■■□□□ 1.63
RTCBQ9Y3I0 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RTCBQ9Y3I0 LINC01238-205ENST00000567549 1107 ntBASIC25.26■■□□□ 1.63
RTCBQ9Y3I0 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC25.26■■□□□ 1.63
RTCBQ9Y3I0 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC25.26■■□□□ 1.63
RTCBQ9Y3I0 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RTCBQ9Y3I0 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC25.26■■□□□ 1.63
RTCBQ9Y3I0 ECEL1P1-201ENST00000373592 1742 ntBASIC25.26■■□□□ 1.63
RTCBQ9Y3I0 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RTCBQ9Y3I0 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
RTCBQ9Y3I0 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
RTCBQ9Y3I0 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
RTCBQ9Y3I0 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC25.25■■□□□ 1.63
RTCBQ9Y3I0 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC25.25■■□□□ 1.63
RTCBQ9Y3I0 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC25.25■■□□□ 1.63
RTCBQ9Y3I0 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC25.25■■□□□ 1.63
RTCBQ9Y3I0 AC091076.1-201ENST00000610741 619 ntBASIC25.25■■□□□ 1.63
RTCBQ9Y3I0 AL358472.4-201ENST00000633140 710 ntBASIC25.25■■□□□ 1.63
RTCBQ9Y3I0 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RTCBQ9Y3I0 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC25.25■■□□□ 1.63
RTCBQ9Y3I0 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RTCBQ9Y3I0 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RTCBQ9Y3I0 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC25.25■■□□□ 1.63
RTCBQ9Y3I0 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RTCBQ9Y3I0 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC25.24■■□□□ 1.63
RTCBQ9Y3I0 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC25.24■■□□□ 1.63
RTCBQ9Y3I0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
RTCBQ9Y3I0 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
RTCBQ9Y3I0 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RTCBQ9Y3I0 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RTCBQ9Y3I0 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
RTCBQ9Y3I0 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC25.24■■□□□ 1.63
RTCBQ9Y3I0 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC25.24■■□□□ 1.63
RTCBQ9Y3I0 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
RTCBQ9Y3I0 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
RTCBQ9Y3I0 H19-201ENST00000411754 1788 ntTSL 5 BASIC25.23■■□□□ 1.63
RTCBQ9Y3I0 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC25.23■■□□□ 1.63
RTCBQ9Y3I0 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RTCBQ9Y3I0 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RTCBQ9Y3I0 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RTCBQ9Y3I0 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC25.23■■□□□ 1.63
RTCBQ9Y3I0 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RTCBQ9Y3I0 AC131212.4-201ENST00000623606 975 ntBASIC25.23■■□□□ 1.63
RTCBQ9Y3I0 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RTCBQ9Y3I0 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC25.23■■□□□ 1.63
RTCBQ9Y3I0 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
RTCBQ9Y3I0 STK25-204ENST00000405585 1643 ntTSL 2 BASIC25.23■■□□□ 1.63
RTCBQ9Y3I0 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC25.23■■□□□ 1.63
RTCBQ9Y3I0 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
RTCBQ9Y3I0 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 Z98882.1-201ENST00000622160 2253 ntBASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 AC117947.1-201ENST00000427448 529 ntBASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 FDX2-206ENST00000492239 773 ntTSL 2 BASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 WDR88-203ENST00000592765 651 ntTSL 5 BASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
RTCBQ9Y3I0 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC25.2■■□□□ 1.63
RTCBQ9Y3I0 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
RTCBQ9Y3I0 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
RTCBQ9Y3I0 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
RTCBQ9Y3I0 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
RTCBQ9Y3I0 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25.2■■□□□ 1.63
RTCBQ9Y3I0 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
RTCBQ9Y3I0 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
RTCBQ9Y3I0 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
RTCBQ9Y3I0 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
RTCBQ9Y3I0 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
RTCBQ9Y3I0 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
RTCBQ9Y3I0 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
RTCBQ9Y3I0 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
RTCBQ9Y3I0 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC25.2■■□□□ 1.62
RTCBQ9Y3I0 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
RTCBQ9Y3I0 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
RTCBQ9Y3I0 ISCU-203ENST00000431221 799 ntTSL 2 BASIC25.2■■□□□ 1.62
RTCBQ9Y3I0 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
RTCBQ9Y3I0 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms