Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 VMO1-204ENST00000441199 741 ntTSL 2 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 AC133552.2-202ENST00000575694 574 ntBASIC16.11■□□□□ 0.17
FOXA2Q9Y261 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA2Q9Y261 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.1■□□□□ 0.17
FOXA2Q9Y261 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 PPP1R14BP3-201ENST00000509033 445 ntBASIC16.1■□□□□ 0.17
FOXA2Q9Y261 AF201337.1-201ENST00000520239 748 ntBASIC16.1■□□□□ 0.17
FOXA2Q9Y261 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 AL158211.5-201ENST00000623583 2518 ntBASIC16.1■□□□□ 0.17
FOXA2Q9Y261 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
FOXA2Q9Y261 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 TK2-208ENST00000545043 1120 ntTSL 2 BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 AC105036.2-201ENST00000569468 176 ntBASIC16.09■□□□□ 0.17
FOXA2Q9Y261 AL121832.2-201ENST00000610979 668 ntBASIC16.09■□□□□ 0.17
FOXA2Q9Y261 AC100791.3-201ENST00000617619 330 ntBASIC16.09■□□□□ 0.17
FOXA2Q9Y261 AL050303.2-201ENST00000619798 666 ntBASIC16.09■□□□□ 0.17
FOXA2Q9Y261 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
FOXA2Q9Y261 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.08■□□□□ 0.17
FOXA2Q9Y261 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
FOXA2Q9Y261 AC116562.4-201ENST00000641316 2276 ntBASIC16.08■□□□□ 0.17
FOXA2Q9Y261 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
FOXA2Q9Y261 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms