Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 ID1-201ENST00000376105 1233 ntBASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 AFG3L1P-217ENST00000557444 2447 ntBASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
AP4E1Q9UPM8 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.69■□□□□ 0.9
AP4E1Q9UPM8 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
AP4E1Q9UPM8 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
AP4E1Q9UPM8 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP4E1Q9UPM8 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
AP4E1Q9UPM8 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP4E1Q9UPM8 AL390719.1-204ENST00000412397 1219 ntBASIC20.67■□□□□ 0.9
AP4E1Q9UPM8 AC005829.2-201ENST00000571422 1056 ntBASIC20.67■□□□□ 0.9
AP4E1Q9UPM8 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP4E1Q9UPM8 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP4E1Q9UPM8 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP4E1Q9UPM8 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP4E1Q9UPM8 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 HLA-B-256ENST00000639848 1089 ntBASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
AP4E1Q9UPM8 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 AC092368.3-202ENST00000574180 1591 ntBASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms