Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 KRT19P1-201ENST00000405746 1186 ntBASIC19.69■□□□□ 0.74
MKS1Q9NXB0 AL591742.1-201ENST00000604433 565 ntBASIC19.69■□□□□ 0.74
MKS1Q9NXB0 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 MYCNOS-205ENST00000641950 531 ntBASIC19.69■□□□□ 0.74
MKS1Q9NXB0 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MKS1Q9NXB0 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 KRT8P20-201ENST00000423953 1409 ntBASIC19.68■□□□□ 0.74
MKS1Q9NXB0 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MKS1Q9NXB0 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.67■□□□□ 0.74
MKS1Q9NXB0 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.66■□□□□ 0.74
MKS1Q9NXB0 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.66■□□□□ 0.74
MKS1Q9NXB0 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 AL138781.2-201ENST00000617896 1843 ntBASIC19.65■□□□□ 0.74
MKS1Q9NXB0 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 TERF1P5-201ENST00000477545 1207 ntBASIC19.65■□□□□ 0.74
MKS1Q9NXB0 AC007322.4-201ENST00000509611 723 ntBASIC19.65■□□□□ 0.74
MKS1Q9NXB0 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 KRT18P61-201ENST00000585825 1298 ntBASIC19.65■□□□□ 0.74
MKS1Q9NXB0 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms