Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 AC098590.1-201ENST00000468126 897 ntBASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CUEDC1Q9NWM3 PCDHAC2-203ENST00000615316 3011 ntBASIC19.27■□□□□ 0.67
CUEDC1Q9NWM3 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 AC005829.2-201ENST00000571422 1056 ntBASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 AC006557.6-201ENST00000623071 864 ntBASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CUEDC1Q9NWM3 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 RPS2P4-201ENST00000476944 856 ntBASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CUEDC1Q9NWM3 RNF165-205ENST00000588679 2904 ntBASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 HLA-G-202ENST00000376815 851 ntBASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 HLA-G-203ENST00000376818 1127 ntBASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
CUEDC1Q9NWM3 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CUEDC1Q9NWM3 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms