Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.96■□□□□ 0.79
TM9SF3Q9HD45 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TM9SF3Q9HD45 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TM9SF3Q9HD45 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TM9SF3Q9HD45 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.96■□□□□ 0.79
TM9SF3Q9HD45 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
TM9SF3Q9HD45 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TM9SF3Q9HD45 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TM9SF3Q9HD45 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TM9SF3Q9HD45 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 KRT8P36-201ENST00000489121 1440 ntBASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 AC087499.1-201ENST00000418141 1075 ntBASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 KRT18P21-201ENST00000515767 1272 ntBASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 AL355075.4-201ENST00000554988 638 ntBASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TM9SF3Q9HD45 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 LINC01521-201ENST00000504184 1943 ntBASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TM9SF3Q9HD45 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 AC124283.5-201ENST00000624661 1809 ntBASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 MIR2861-201ENST00000636310 90 ntBASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TM9SF3Q9HD45 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 AL157384.1-201ENST00000445995 2473 ntBASIC19.92■□□□□ 0.78
TM9SF3Q9HD45 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 KRT16P5-201ENST00000455284 522 ntBASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 AC010331.1-201ENST00000611423 582 ntBASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 AC026471.5-201ENST00000615068 467 ntBASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 AC092667.1-201ENST00000434301 2586 ntBASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 HTR7P1-201ENST00000538670 1336 ntBASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 NBPF21P-201ENST00000425093 1451 ntBASIC19.91■□□□□ 0.78
TM9SF3Q9HD45 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms