Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
USP42Q9H9J4 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC25.43■■□□□ 1.66
USP42Q9H9J4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC25.43■■□□□ 1.66
USP42Q9H9J4 NIFKP9-201ENST00000419265 221 ntBASIC25.43■■□□□ 1.66
USP42Q9H9J4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC25.43■■□□□ 1.66
USP42Q9H9J4 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC25.43■■□□□ 1.66
USP42Q9H9J4 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC25.43■■□□□ 1.66
USP42Q9H9J4 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
USP42Q9H9J4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC25.43■■□□□ 1.66
USP42Q9H9J4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC25.43■■□□□ 1.66
USP42Q9H9J4 KRT18P22-201ENST00000402024 1347 ntBASIC25.43■■□□□ 1.66
USP42Q9H9J4 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC25.43■■□□□ 1.66
USP42Q9H9J4 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
USP42Q9H9J4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC25.42■■□□□ 1.66
USP42Q9H9J4 SLC25A3P1-201ENST00000443844 931 ntBASIC25.42■■□□□ 1.66
USP42Q9H9J4 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC25.42■■□□□ 1.66
USP42Q9H9J4 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
USP42Q9H9J4 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC25.42■■□□□ 1.66
USP42Q9H9J4 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
USP42Q9H9J4 STAC-204ENST00000457375 1366 ntTSL 2 BASIC25.42■■□□□ 1.66
USP42Q9H9J4 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
USP42Q9H9J4 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
USP42Q9H9J4 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
USP42Q9H9J4 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
USP42Q9H9J4 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
USP42Q9H9J4 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC25.41■■□□□ 1.66
USP42Q9H9J4 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC25.41■■□□□ 1.66
USP42Q9H9J4 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP42Q9H9J4 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP42Q9H9J4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC25.41■■□□□ 1.66
USP42Q9H9J4 KSR1P1-201ENST00000446298 240 ntBASIC25.41■■□□□ 1.66
USP42Q9H9J4 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
USP42Q9H9J4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC25.41■■□□□ 1.66
USP42Q9H9J4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC25.41■■□□□ 1.66
USP42Q9H9J4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP42Q9H9J4 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
USP42Q9H9J4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC25.41■■□□□ 1.66
USP42Q9H9J4 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP42Q9H9J4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC25.41■■□□□ 1.66
USP42Q9H9J4 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP42Q9H9J4 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP42Q9H9J4 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP42Q9H9J4 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC25.41■■□□□ 1.66
USP42Q9H9J4 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC25.41■■□□□ 1.66
USP42Q9H9J4 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP42Q9H9J4 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP42Q9H9J4 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
USP42Q9H9J4 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP42Q9H9J4 AL137013.1-201ENST00000432946 1228 ntBASIC25.4■■□□□ 1.66
USP42Q9H9J4 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP42Q9H9J4 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC25.4■■□□□ 1.66
USP42Q9H9J4 CFL2-205ENST00000555765 632 ntTSL 2 BASIC25.4■■□□□ 1.66
USP42Q9H9J4 CR392000.1-201ENST00000624770 1228 ntBASIC25.4■■□□□ 1.66
USP42Q9H9J4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC25.4■■□□□ 1.66
USP42Q9H9J4 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP42Q9H9J4 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC25.4■■□□□ 1.66
USP42Q9H9J4 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP42Q9H9J4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC25.4■■□□□ 1.66
USP42Q9H9J4 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC25.4■■□□□ 1.66
USP42Q9H9J4 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
USP42Q9H9J4 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP42Q9H9J4 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC25.4■■□□□ 1.66
USP42Q9H9J4 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP42Q9H9J4 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP42Q9H9J4 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP42Q9H9J4 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP42Q9H9J4 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC25.39■■□□□ 1.66
USP42Q9H9J4 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC25.39■■□□□ 1.66
USP42Q9H9J4 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
USP42Q9H9J4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC25.39■■□□□ 1.66
USP42Q9H9J4 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC25.39■■□□□ 1.66
USP42Q9H9J4 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
USP42Q9H9J4 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC25.39■■□□□ 1.66
USP42Q9H9J4 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC25.39■■□□□ 1.66
USP42Q9H9J4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
USP42Q9H9J4 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
USP42Q9H9J4 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC25.39■■□□□ 1.65
USP42Q9H9J4 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.65
USP42Q9H9J4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP42Q9H9J4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP42Q9H9J4 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC25.38■■□□□ 1.65
USP42Q9H9J4 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC25.38■■□□□ 1.65
USP42Q9H9J4 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP42Q9H9J4 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC25.38■■□□□ 1.65
USP42Q9H9J4 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC25.38■■□□□ 1.65
USP42Q9H9J4 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
USP42Q9H9J4 KRT16P1-201ENST00000399124 1418 ntBASIC25.38■■□□□ 1.65
USP42Q9H9J4 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC25.38■■□□□ 1.65
USP42Q9H9J4 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC25.38■■□□□ 1.65
USP42Q9H9J4 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC25.38■■□□□ 1.65
USP42Q9H9J4 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP42Q9H9J4 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP42Q9H9J4 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC25.38■■□□□ 1.65
USP42Q9H9J4 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USP42Q9H9J4 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC25.37■■□□□ 1.65
USP42Q9H9J4 DUX4L26-201ENST00000489078 1255 ntBASIC25.37■■□□□ 1.65
USP42Q9H9J4 TMA16-209ENST00000513272 803 ntTSL 2 BASIC25.37■■□□□ 1.65
USP42Q9H9J4 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USP42Q9H9J4 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC25.37■■□□□ 1.65
USP42Q9H9J4 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC25.37■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms