Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC14.92□□□□□ -0.02
LINC00477Q96M19 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 MCRIP2P1-201ENST00000394346 511 ntBASIC14.92□□□□□ -0.02
LINC00477Q96M19 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC14.92□□□□□ -0.02
LINC00477Q96M19 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 KRT18P61-201ENST00000585825 1298 ntBASIC14.92□□□□□ -0.02
LINC00477Q96M19 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
LINC00477Q96M19 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC14.92□□□□□ -0.02
LINC00477Q96M19 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
LINC00477Q96M19 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC14.92□□□□□ -0.02
LINC00477Q96M19 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC14.92□□□□□ -0.02
LINC00477Q96M19 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 AC125437.2-201ENST00000625180 2167 ntBASIC14.92□□□□□ -0.02
LINC00477Q96M19 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC14.92□□□□□ -0.02
LINC00477Q96M19 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
LINC00477Q96M19 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LINC00477Q96M19 KRT16P6-202ENST00000425692 1426 ntBASIC14.92□□□□□ -0.02
LINC00477Q96M19 KRT8P17-201ENST00000453110 1448 ntBASIC14.92□□□□□ -0.02
LINC00477Q96M19 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC14.92□□□□□ -0.02
LINC00477Q96M19 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00477Q96M19 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00477Q96M19 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00477Q96M19 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00477Q96M19 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 SPI1-203ENST00000533030 661 ntTSL 2 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00477Q96M19 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00477Q96M19 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00477Q96M19 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC14.91□□□□□ -0.02
LINC00477Q96M19 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00477Q96M19 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00477Q96M19 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LINC00477Q96M19 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00477Q96M19 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 GAS2L1P2-201ENST00000436355 1356 ntBASIC14.9□□□□□ -0.02
LINC00477Q96M19 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00477Q96M19 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00477Q96M19 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00477Q96M19 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00477Q96M19 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 DBI-210ENST00000542275 757 ntTSL 5 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 MOK-225ENST00000522867 1883 ntTSL 5 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LINC00477Q96M19 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00477Q96M19 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00477Q96M19 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LINC00477Q96M19 AC009237.14-201ENST00000609975 1594 ntBASIC14.9□□□□□ -0.02
LINC00477Q96M19 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
LINC00477Q96M19 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LINC00477Q96M19 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LINC00477Q96M19 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LINC00477Q96M19 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LINC00477Q96M19 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LINC00477Q96M19 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms