Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 RPS2P4-201ENST00000476944 856 ntBASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 AC120498.8-201ENST00000614275 531 ntBASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP3Q96DZ5 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLIP3Q96DZ5 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 PLK5-205ENST00000642079 1969 ntBASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.15■□□□□ 0.66
CLIP3Q96DZ5 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
CLIP3Q96DZ5 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
CLIP3Q96DZ5 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms