Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.53■□□□□ 0.56
CTHRC1Q96CG8 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTHRC1Q96CG8 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.53■□□□□ 0.56
CTHRC1Q96CG8 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.53■□□□□ 0.56
CTHRC1Q96CG8 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTHRC1Q96CG8 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.52■□□□□ 0.56
CTHRC1Q96CG8 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CTHRC1Q96CG8 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.52■□□□□ 0.56
CTHRC1Q96CG8 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTHRC1Q96CG8 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTHRC1Q96CG8 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTHRC1Q96CG8 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTHRC1Q96CG8 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CTHRC1Q96CG8 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTHRC1Q96CG8 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CTHRC1Q96CG8 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.52■□□□□ 0.56
CTHRC1Q96CG8 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
CTHRC1Q96CG8 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.52■□□□□ 0.56
CTHRC1Q96CG8 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.55
CTHRC1Q96CG8 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CTHRC1Q96CG8 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CTHRC1Q96CG8 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CTHRC1Q96CG8 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.52■□□□□ 0.55
CTHRC1Q96CG8 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 AP001271.2-201ENST00000624018 1556 ntBASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 UNC93B4-201ENST00000505679 747 ntBASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 AC120498.8-201ENST00000614275 531 ntBASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTHRC1Q96CG8 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 PCDHAC2-203ENST00000615316 3011 ntBASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 SOX15-203ENST00000570788 1093 ntBASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 AC116351.2-201ENST00000606540 1585 ntBASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.5■□□□□ 0.55
CTHRC1Q96CG8 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 AC008687.6-201ENST00000596318 630 ntBASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 AC008403.3-201ENST00000598924 454 ntBASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CTHRC1Q96CG8 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTHRC1Q96CG8 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTHRC1Q96CG8 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTHRC1Q96CG8 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTHRC1Q96CG8 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.48■□□□□ 0.55
CTHRC1Q96CG8 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CTHRC1Q96CG8 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CTHRC1Q96CG8 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms