Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
SH3RF1Q7Z6J0 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.89■■□□□ 1.26
SH3RF1Q7Z6J0 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.26
SH3RF1Q7Z6J0 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
SH3RF1Q7Z6J0 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
SH3RF1Q7Z6J0 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
SH3RF1Q7Z6J0 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 SERF2-207ENST00000409614 582 ntTSL 2 BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 LY6E-205ENST00000519611 635 ntTSL 3 BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 MTDHP1-201ENST00000605323 784 ntBASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
SH3RF1Q7Z6J0 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 NXN-202ENST00000537628 1340 ntTSL 3 BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 AC012306.2-201ENST00000609350 630 ntBASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 AC124016.1-201ENST00000609552 612 ntBASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 AL023875.1-201ENST00000640777 796 ntBASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 AL391422.3-201ENST00000603791 2761 ntBASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.88■■□□□ 1.25
SH3RF1Q7Z6J0 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 SAPCD2P1-201ENST00000395413 1184 ntBASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 THEM4-205ENST00000489410 643 ntTSL 2 BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 AL445228.2-201ENST00000605589 952 ntBASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC22.87■■□□□ 1.25
SH3RF1Q7Z6J0 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 AC007322.3-201ENST00000426526 701 ntBASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 AC097493.4-201ENST00000641197 219 ntBASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC22.86■■□□□ 1.25
SH3RF1Q7Z6J0 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC22.85■■□□□ 1.25
SH3RF1Q7Z6J0 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SH3RF1Q7Z6J0 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SH3RF1Q7Z6J0 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC22.85■■□□□ 1.25
SH3RF1Q7Z6J0 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SH3RF1Q7Z6J0 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
SH3RF1Q7Z6J0 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC22.85■■□□□ 1.25
SH3RF1Q7Z6J0 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC22.85■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms