Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC16.49■□□□□ 0.23
CSPG4Q6UVK1 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 PNN-205ENST00000556530 601 ntTSL 2 BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 AL445675.2-201ENST00000620291 557 ntBASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 CR392000.1-201ENST00000624770 1228 ntBASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 MYC-208ENST00000641036 567 ntBASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CSPG4Q6UVK1 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 AL031133.1-201ENST00000406807 723 ntBASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 AL450487.1-201ENST00000426799 995 ntBASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 BX664615.1-201ENST00000443558 458 ntBASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 FAM87A-204ENST00000613235 858 ntBASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 ATP5G1P1-201ENST00000448724 379 ntBASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 AC022616.7-201ENST00000525383 220 ntBASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 PTBP1P-201ENST00000554374 1601 ntBASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC16.47■□□□□ 0.23
CSPG4Q6UVK1 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 ECEL1P2-202ENST00000465689 757 ntBASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 KRT16P1-201ENST00000399124 1418 ntBASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 AC011484.1-201ENST00000377652 1995 ntBASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 AC011506.1-201ENST00000474329 610 ntBASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 AL031985.4-201ENST00000642138 673 ntBASIC16.46■□□□□ 0.23
CSPG4Q6UVK1 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
CSPG4Q6UVK1 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
CSPG4Q6UVK1 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CSPG4Q6UVK1 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
CSPG4Q6UVK1 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.22
CSPG4Q6UVK1 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.46■□□□□ 0.22
CSPG4Q6UVK1 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CSPG4Q6UVK1 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms