Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 AL137784.2-201ENST00000607332 1000 ntBASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 AL589743.5-201ENST00000616611 1050 ntBASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.91■■□□□ 1.1
CCDC40Q4G0X9 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 KRT8P17-201ENST00000453110 1448 ntBASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 AL512625.2-201ENST00000417533 625 ntBASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CCDC40Q4G0X9 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CCDC40Q4G0X9 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
CCDC40Q4G0X9 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
CCDC40Q4G0X9 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.89■■□□□ 1.1
CCDC40Q4G0X9 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CCDC40Q4G0X9 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.89■■□□□ 1.09
CCDC40Q4G0X9 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.89■■□□□ 1.09
CCDC40Q4G0X9 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.89■■□□□ 1.09
CCDC40Q4G0X9 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC40Q4G0X9 KRT17P1-201ENST00000399211 1546 ntBASIC21.89■■□□□ 1.09
CCDC40Q4G0X9 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC40Q4G0X9 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC40Q4G0X9 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC40Q4G0X9 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC40Q4G0X9 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.89■■□□□ 1.09
CCDC40Q4G0X9 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC40Q4G0X9 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CCDC40Q4G0X9 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 TMEM179-206ENST00000616017 1645 ntBASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 AL031963.3-201ENST00000606441 850 ntBASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC40Q4G0X9 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC40Q4G0X9 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
CCDC40Q4G0X9 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC40Q4G0X9 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC40Q4G0X9 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.87■■□□□ 1.09
CCDC40Q4G0X9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms