Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.27■■□□□ 1
USP41Q3LFD5 AP003071.4-201ENST00000562276 1284 ntBASIC21.27■■□□□ 1
USP41Q3LFD5 AC073195.1-201ENST00000607241 877 ntBASIC21.27■■□□□ 1
USP41Q3LFD5 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
USP41Q3LFD5 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP41Q3LFD5 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
USP41Q3LFD5 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.27■■□□□ 1
USP41Q3LFD5 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
USP41Q3LFD5 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
USP41Q3LFD5 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP41Q3LFD5 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP41Q3LFD5 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP41Q3LFD5 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
USP41Q3LFD5 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.26■□□□□ 0.99
USP41Q3LFD5 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.26■□□□□ 0.99
USP41Q3LFD5 AC133561.5-201ENST00000635547 218 ntBASIC21.26■□□□□ 0.99
USP41Q3LFD5 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.26■□□□□ 0.99
USP41Q3LFD5 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
USP41Q3LFD5 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.26■□□□□ 0.99
USP41Q3LFD5 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP41Q3LFD5 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP41Q3LFD5 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
USP41Q3LFD5 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.25■□□□□ 0.99
USP41Q3LFD5 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP41Q3LFD5 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP41Q3LFD5 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP41Q3LFD5 AF106564.1-201ENST00000607058 2553 ntBASIC21.25■□□□□ 0.99
USP41Q3LFD5 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP41Q3LFD5 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP41Q3LFD5 FAM197Y1-201ENST00000421178 764 ntBASIC21.25■□□□□ 0.99
USP41Q3LFD5 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.25■□□□□ 0.99
USP41Q3LFD5 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP41Q3LFD5 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
USP41Q3LFD5 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.25■□□□□ 0.99
USP41Q3LFD5 FP700111.2-201ENST00000619190 1892 ntBASIC21.25■□□□□ 0.99
USP41Q3LFD5 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.25■□□□□ 0.99
USP41Q3LFD5 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.25■□□□□ 0.99
USP41Q3LFD5 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.25■□□□□ 0.99
USP41Q3LFD5 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP41Q3LFD5 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.25■□□□□ 0.99
USP41Q3LFD5 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.25■□□□□ 0.99
USP41Q3LFD5 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.25■□□□□ 0.99
USP41Q3LFD5 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.25■□□□□ 0.99
USP41Q3LFD5 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.24■□□□□ 0.99
USP41Q3LFD5 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
USP41Q3LFD5 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
USP41Q3LFD5 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.24■□□□□ 0.99
USP41Q3LFD5 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP41Q3LFD5 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP41Q3LFD5 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP41Q3LFD5 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP41Q3LFD5 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP41Q3LFD5 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP41Q3LFD5 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.24■□□□□ 0.99
USP41Q3LFD5 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.24■□□□□ 0.99
USP41Q3LFD5 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
USP41Q3LFD5 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP41Q3LFD5 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP41Q3LFD5 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP41Q3LFD5 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP41Q3LFD5 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP41Q3LFD5 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP41Q3LFD5 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
USP41Q3LFD5 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
USP41Q3LFD5 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.23■□□□□ 0.99
USP41Q3LFD5 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP41Q3LFD5 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
USP41Q3LFD5 AP002982.1-201ENST00000492365 877 ntBASIC21.23■□□□□ 0.99
USP41Q3LFD5 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
USP41Q3LFD5 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.23■□□□□ 0.99
USP41Q3LFD5 AL353708.3-201ENST00000610272 989 ntBASIC21.23■□□□□ 0.99
USP41Q3LFD5 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.23■□□□□ 0.99
USP41Q3LFD5 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP41Q3LFD5 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP41Q3LFD5 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP41Q3LFD5 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.23■□□□□ 0.99
USP41Q3LFD5 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP41Q3LFD5 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.23■□□□□ 0.99
USP41Q3LFD5 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.23■□□□□ 0.99
USP41Q3LFD5 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP41Q3LFD5 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP41Q3LFD5 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP41Q3LFD5 AC006128.1-201ENST00000624704 1661 ntBASIC21.22■□□□□ 0.99
USP41Q3LFD5 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP41Q3LFD5 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP41Q3LFD5 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
USP41Q3LFD5 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP41Q3LFD5 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.22■□□□□ 0.99
USP41Q3LFD5 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.22■□□□□ 0.99
USP41Q3LFD5 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
USP41Q3LFD5 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP41Q3LFD5 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP41Q3LFD5 AC005229.4-201ENST00000610085 2198 ntBASIC21.21■□□□□ 0.99
USP41Q3LFD5 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
USP41Q3LFD5 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
USP41Q3LFD5 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP41Q3LFD5 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
USP41Q3LFD5 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.21■□□□□ 0.99
USP41Q3LFD5 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.21■□□□□ 0.99
USP41Q3LFD5 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms