Protein–RNA interactions for Protein: Q04215

TY1A-MR1, Transposon Ty1-MR1 Gag polyprotein, yeastyeast

Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1A-MR1Q04215 FAB1YFR019W 6837 nt1.54□□□□□ -2.16
TY1A-MR1Q04215 LAA1YJL207C 6045 nt1.52□□□□□ -2.17
TY1A-MR1Q04215 CAT8YMR280C 4302 nt1.52□□□□□ -2.17
TY1A-MR1Q04215 YOR376W-AYOR376W-A 156 nt1.52□□□□□ -2.17
TY1A-MR1Q04215 BST1YFL025C 3090 nt1.52□□□□□ -2.17
TY1A-MR1Q04215 CFT1YDR301W 4074 nt1.52□□□□□ -2.17
TY1A-MR1Q04215 REV3YPL167C 4515 nt1.51□□□□□ -2.17
TY1A-MR1Q04215 VPS15YBR097W 4365 nt1.49□□□□□ -2.17
TY1A-MR1Q04215 YDL114W-AYDL114W-A 114 nt1.49□□□□□ -2.17
TY1A-MR1Q04215 PEP1YBL017C 4740 nt1.48□□□□□ -2.17
TY1A-MR1Q04215 MYO1YHR023W 5787 nt1.47□□□□□ -2.17
TY1A-MR1Q04215 YNL054W-BYNL054W-B 5250 nt1.47□□□□□ -2.17
TY1A-MR1Q04215 NUP192YJL039C 5052 nt1.47□□□□□ -2.17
TY1A-MR1Q04215 CLU1YMR012W 3834 nt1.45□□□□□ -2.18
TY1A-MR1Q04215 YGR130CYGR130C 2451 nt1.43□□□□□ -2.18
TY1A-MR1Q04215 snR67snR67 82 nt1.43□□□□□ -2.18
TY1A-MR1Q04215 SSK2YNR031C 4740 nt1.43□□□□□ -2.18
TY1A-MR1Q04215 YOR093CYOR093C 4947 nt1.41□□□□□ -2.18
TY1A-MR1Q04215 IRA1YBR140C 9279 nt1.39□□□□□ -2.19
TY1A-MR1Q04215 SPC110YDR356W 2835 nt1.39□□□□□ -2.19
TY1A-MR1Q04215 tV(UAC)QtV(UAC)Q 76 nt1.39□□□□□ -2.19
TY1A-MR1Q04215 SPT7YBR081C 3999 nt1.39□□□□□ -2.19
TY1A-MR1Q04215 MEC1YBR136W 7107 nt1.39□□□□□ -2.19
TY1A-MR1Q04215 YKL106C-AYKL106C-A 120 nt1.38□□□□□ -2.19
TY1A-MR1Q04215 CCH1YGR217W 6120 nt1.37□□□□□ -2.19
TY1A-MR1Q04215 DNF3YMR162C 4971 nt1.35□□□□□ -2.19
TY1A-MR1Q04215 YNL284C-BYNL284C-B 5268 nt1.34□□□□□ -2.19
TY1A-MR1Q04215 tQ(UUG)E2tQ(UUG)E2 72 nt1.34□□□□□ -2.19
TY1A-MR1Q04215 snR40snR40 97 nt1.33□□□□□ -2.2
TY1A-MR1Q04215 YOR192C-BYOR192C-B 5313 nt1.31□□□□□ -2.2
TY1A-MR1Q04215 YMR160WYMR160W 2451 nt1.3□□□□□ -2.2
TY1A-MR1Q04215 VAM6YDL077C 3150 nt1.29□□□□□ -2.2
TY1A-MR1Q04215 BUD3YCL014W 4911 nt1.26□□□□□ -2.21
TY1A-MR1Q04215 RKR1YMR247C 4689 nt1.24□□□□□ -2.21
TY1A-MR1Q04215 HKR1YDR420W 5409 nt1.22□□□□□ -2.21
TY1A-MR1Q04215 BRR2YER172C 6492 nt1.21□□□□□ -2.22
TY1A-MR1Q04215 YPR117WYPR117W 7470 nt1.18□□□□□ -2.22
TY1A-MR1Q04215 MLP2YIL149C 5040 nt1.16□□□□□ -2.22
TY1A-MR1Q04215 FIG2YCR089W 4830 nt1.13□□□□□ -2.23
TY1A-MR1Q04215 LTE1YAL024C 4308 nt1.12□□□□□ -2.23
TY1A-MR1Q04215 tH(GUG)E1tH(GUG)E1 72 nt1.06□□□□□ -2.24
TY1A-MR1Q04215 tH(GUG)E2tH(GUG)E2 72 nt1.06□□□□□ -2.24
TY1A-MR1Q04215 tH(GUG)G1tH(GUG)G1 72 nt1.06□□□□□ -2.24
TY1A-MR1Q04215 tH(GUG)G2tH(GUG)G2 72 nt1.06□□□□□ -2.24
TY1A-MR1Q04215 tH(GUG)HtH(GUG)H 72 nt1.06□□□□□ -2.24
TY1A-MR1Q04215 tH(GUG)KtH(GUG)K 72 nt1.06□□□□□ -2.24
TY1A-MR1Q04215 tH(GUG)MtH(GUG)M 72 nt1.06□□□□□ -2.24
TY1A-MR1Q04215 snR77snR77 88 nt1.05□□□□□ -2.24
TY1A-MR1Q04215 PAU24YBR301W 363 nt1.05□□□□□ -2.24
TY1A-MR1Q04215 SCC2YDR180W 4482 nt1.02□□□□□ -2.25
TY1A-MR1Q04215 YBL100W-BYBL100W-B 5313 nt1.01□□□□□ -2.25
TY1A-MR1Q04215 YOR316C-AYOR316C-A 210 nt1.01□□□□□ -2.25
TY1A-MR1Q04215 YJR029WYJR029W 5268 nt0.94□□□□□ -2.26
TY1A-MR1Q04215 YPR137C-BYPR137C-B 5268 nt0.94□□□□□ -2.26
TY1A-MR1Q04215 SBH2YER019C-A 267 nt0.94□□□□□ -2.26
TY1A-MR1Q04215 YML100W-AYML100W-A 174 nt0.91□□□□□ -2.26
TY1A-MR1Q04215 BEM2YER155C 6504 nt0.9□□□□□ -2.27
TY1A-MR1Q04215 THO2YNL139C 4794 nt0.89□□□□□ -2.27
TY1A-MR1Q04215 EMT1tM(CAU)D 73 nt0.85□□□□□ -2.27
TY1A-MR1Q04215 EMT5tM(CAU)J1 73 nt0.85□□□□□ -2.27
TY1A-MR1Q04215 EMT3tM(CAU)J2 73 nt0.85□□□□□ -2.27
TY1A-MR1Q04215 EMT4tM(CAU)M 73 nt0.85□□□□□ -2.27
TY1A-MR1Q04215 EMT2tM(CAU)O2 73 nt0.85□□□□□ -2.27
TY1A-MR1Q04215 tV(UAC)BtV(UAC)B 74 nt0.85□□□□□ -2.27
TY1A-MR1Q04215 tV(UAC)DtV(UAC)D 74 nt0.85□□□□□ -2.27
TY1A-MR1Q04215 DOP1YDR141C 5097 nt0.84□□□□□ -2.28
TY1A-MR1Q04215 SOV1YMR066W 2697 nt0.83□□□□□ -2.28
TY1A-MR1Q04215 MLP1YKR095W 5628 nt0.83□□□□□ -2.28
TY1A-MR1Q04215 YOR186C-AYOR186C-A 210 nt0.81□□□□□ -2.28
TY1A-MR1Q04215 IML1YJR138W 4755 nt0.79□□□□□ -2.28
TY1A-MR1Q04215 IQG1YPL242C 4488 nt0.69□□□□□ -2.3
TY1A-MR1Q04215 PAU9YBL108C-A 129 nt0.68□□□□□ -2.3
TY1A-MR1Q04215 ESP1YGR098C 4893 nt0.68□□□□□ -2.3
TY1A-MR1Q04215 YPR159C-AYPR159C-A 102 nt0.63□□□□□ -2.31
TY1A-MR1Q04215 UTP10YJL109C 5310 nt0.63□□□□□ -2.31
TY1A-MR1Q04215 YMR272W-AYMR272W-A 114 nt0.58□□□□□ -2.32
TY1A-MR1Q04215 tT(AGU)BtT(AGU)B 73 nt0.55□□□□□ -2.32
TY1A-MR1Q04215 tT(AGU)CtT(AGU)C 73 nt0.55□□□□□ -2.32
TY1A-MR1Q04215 tT(AGU)DtT(AGU)D 73 nt0.55□□□□□ -2.32
TY1A-MR1Q04215 tT(AGU)HtT(AGU)H 73 nt0.55□□□□□ -2.32
TY1A-MR1Q04215 tT(AGU)I1tT(AGU)I1 73 nt0.55□□□□□ -2.32
TY1A-MR1Q04215 tT(AGU)I2tT(AGU)I2 73 nt0.55□□□□□ -2.32
TY1A-MR1Q04215 tT(AGU)JtT(AGU)J 73 nt0.55□□□□□ -2.32
TY1A-MR1Q04215 tT(AGU)N1tT(AGU)N1 73 nt0.55□□□□□ -2.32
TY1A-MR1Q04215 tT(AGU)N2tT(AGU)N2 73 nt0.55□□□□□ -2.32
TY1A-MR1Q04215 tT(AGU)O1tT(AGU)O1 73 nt0.55□□□□□ -2.32
TY1A-MR1Q04215 tT(AGU)O2tT(AGU)O2 73 nt0.55□□□□□ -2.32
TY1A-MR1Q04215 snR128snR128 126 nt0.55□□□□□ -2.32
TY1A-MR1Q04215 FMP27YLR454W 7887 nt0.53□□□□□ -2.32
TY1A-MR1Q04215 UTP20YBL004W 7482 nt0.45□□□□□ -2.34
TY1A-MR1Q04215 RPL41BYDL133C-A 78 nt0.43□□□□□ -2.34
TY1A-MR1Q04215 YKL145W-AYKL145W-A 93 nt0.42□□□□□ -2.34
TY1A-MR1Q04215 YOR335W-AYOR335W-A 81 nt0.42□□□□□ -2.34
TY1A-MR1Q04215 snR161snR161 161 nt0.42□□□□□ -2.34
TY1A-MR1Q04215 tC(GCA)QtC(GCA)Q 76 nt0.41□□□□□ -2.34
TY1A-MR1Q04215 tA(UGC)QtA(UGC)Q 76 nt0.4□□□□□ -2.35
TY1A-MR1Q04215 YJL113WYJL113W 4647 nt0.38□□□□□ -2.35
TY1A-MR1Q04215 snR6snR6 112 nt0.36□□□□□ -2.35
TY1A-MR1Q04215 YOL013W-AYOL013W-A 192 nt0.36□□□□□ -2.35
TY1A-MR1Q04215 snR73snR73 106 nt0.2□□□□□ -2.38
Retrieved 100 of 7,029 protein–RNA pairs in 13.2 ms