Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
H3F3AP84243 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
H3F3AP84243 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.85■□□□□ 0.45
H3F3AP84243 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.85■□□□□ 0.45
H3F3AP84243 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
H3F3AP84243 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.84■□□□□ 0.45
H3F3AP84243 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
H3F3AP84243 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.84■□□□□ 0.45
H3F3AP84243 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
H3F3AP84243 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
H3F3AP84243 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.84■□□□□ 0.45
H3F3AP84243 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
H3F3AP84243 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.84■□□□□ 0.45
H3F3AP84243 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
H3F3AP84243 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
H3F3AP84243 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
H3F3AP84243 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
H3F3AP84243 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.84■□□□□ 0.45
H3F3AP84243 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.84■□□□□ 0.45
H3F3AP84243 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.84■□□□□ 0.45
H3F3AP84243 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.84■□□□□ 0.45
H3F3AP84243 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
H3F3AP84243 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
H3F3AP84243 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.84■□□□□ 0.45
H3F3AP84243 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
H3F3AP84243 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
H3F3AP84243 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
H3F3AP84243 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
H3F3AP84243 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
H3F3AP84243 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
H3F3AP84243 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
H3F3AP84243 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
H3F3AP84243 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
H3F3AP84243 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
H3F3AP84243 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
H3F3AP84243 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
H3F3AP84243 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.44
H3F3AP84243 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
H3F3AP84243 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
H3F3AP84243 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
H3F3AP84243 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.83■□□□□ 0.44
H3F3AP84243 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.83■□□□□ 0.44
H3F3AP84243 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.83■□□□□ 0.44
H3F3AP84243 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.83■□□□□ 0.44
H3F3AP84243 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
H3F3AP84243 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC17.83■□□□□ 0.44
H3F3AP84243 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
H3F3AP84243 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
H3F3AP84243 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
H3F3AP84243 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
H3F3AP84243 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
H3F3AP84243 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
H3F3AP84243 AL691432.2-201ENST00000607222 2038 ntBASIC17.82■□□□□ 0.44
H3F3AP84243 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
H3F3AP84243 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.82■□□□□ 0.44
H3F3AP84243 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
H3F3AP84243 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
H3F3AP84243 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
H3F3AP84243 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
H3F3AP84243 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.82■□□□□ 0.44
H3F3AP84243 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
H3F3AP84243 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
H3F3AP84243 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
H3F3AP84243 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
H3F3AP84243 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.82■□□□□ 0.44
H3F3AP84243 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
H3F3AP84243 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
H3F3AP84243 RNA5SP413-201ENST00000516373 109 ntBASIC17.82■□□□□ 0.44
H3F3AP84243 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.82■□□□□ 0.44
H3F3AP84243 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
H3F3AP84243 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
H3F3AP84243 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
H3F3AP84243 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
H3F3AP84243 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
H3F3AP84243 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
H3F3AP84243 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.81■□□□□ 0.44
H3F3AP84243 TCF3P1-201ENST00000423021 1937 ntBASIC17.81■□□□□ 0.44
H3F3AP84243 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.81■□□□□ 0.44
H3F3AP84243 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 UNC93B4-201ENST00000505679 747 ntBASIC17.81■□□□□ 0.44
H3F3AP84243 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
H3F3AP84243 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.81■□□□□ 0.44
H3F3AP84243 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.81■□□□□ 0.44
H3F3AP84243 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.81■□□□□ 0.44
H3F3AP84243 AC006557.6-201ENST00000623071 864 ntBASIC17.81■□□□□ 0.44
H3F3AP84243 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.81■□□□□ 0.44
H3F3AP84243 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
H3F3AP84243 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
H3F3AP84243 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms