Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CDH13P55290 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CDH13P55290 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.47■□□□□ 0.71
CDH13P55290 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
CDH13P55290 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CDH13P55290 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.47■□□□□ 0.71
CDH13P55290 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CDH13P55290 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.47■□□□□ 0.71
CDH13P55290 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.47■□□□□ 0.71
CDH13P55290 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.47■□□□□ 0.71
CDH13P55290 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.47■□□□□ 0.71
CDH13P55290 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.47■□□□□ 0.71
CDH13P55290 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
CDH13P55290 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.47■□□□□ 0.71
CDH13P55290 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CDH13P55290 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CDH13P55290 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CDH13P55290 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CDH13P55290 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.47■□□□□ 0.71
CDH13P55290 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
CDH13P55290 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.46■□□□□ 0.71
CDH13P55290 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.46■□□□□ 0.71
CDH13P55290 AC006015.1-201ENST00000429970 570 ntBASIC19.46■□□□□ 0.71
CDH13P55290 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.46■□□□□ 0.71
CDH13P55290 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.46■□□□□ 0.71
CDH13P55290 AC100791.3-201ENST00000617619 330 ntBASIC19.46■□□□□ 0.71
CDH13P55290 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.46■□□□□ 0.71
CDH13P55290 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 TREX1-205ENST00000625293 1783 ntBASIC19.46■□□□□ 0.71
CDH13P55290 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CDH13P55290 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CDH13P55290 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CDH13P55290 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH13P55290 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.45■□□□□ 0.7
CDH13P55290 RNF165-205ENST00000588679 2904 ntBASIC19.45■□□□□ 0.7
CDH13P55290 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH13P55290 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
CDH13P55290 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDH13P55290 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CDH13P55290 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH13P55290 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH13P55290 KRT8P17-201ENST00000453110 1448 ntBASIC19.45■□□□□ 0.7
CDH13P55290 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH13P55290 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.45■□□□□ 0.7
CDH13P55290 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH13P55290 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CDH13P55290 KRT18P68-201ENST00000392293 1000 ntBASIC19.45■□□□□ 0.7
CDH13P55290 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CDH13P55290 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.45■□□□□ 0.7
CDH13P55290 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.45■□□□□ 0.7
CDH13P55290 RARRES2P6-201ENST00000567333 442 ntBASIC19.45■□□□□ 0.7
CDH13P55290 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CDH13P55290 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH13P55290 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.45■□□□□ 0.7
CDH13P55290 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDH13P55290 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH13P55290 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH13P55290 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDH13P55290 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CDH13P55290 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH13P55290 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH13P55290 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.44■□□□□ 0.7
CDH13P55290 AL355472.2-201ENST00000422958 438 ntBASIC19.44■□□□□ 0.7
CDH13P55290 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.44■□□□□ 0.7
CDH13P55290 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.44■□□□□ 0.7
CDH13P55290 AC105020.6-201ENST00000621523 1217 ntBASIC19.44■□□□□ 0.7
CDH13P55290 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH13P55290 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDH13P55290 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH13P55290 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH13P55290 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH13P55290 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH13P55290 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDH13P55290 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH13P55290 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.43■□□□□ 0.7
CDH13P55290 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH13P55290 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH13P55290 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH13P55290 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CDH13P55290 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH13P55290 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH13P55290 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.43■□□□□ 0.7
CDH13P55290 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.43■□□□□ 0.7
CDH13P55290 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.43■□□□□ 0.7
CDH13P55290 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.43■□□□□ 0.7
CDH13P55290 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms