Protein–RNA interactions for Protein: P54000

SUB1, RNA polymerase II transcriptional coactivator SUB1, yeastyeast

Known RBP Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SUB1P54000 YGL188C-AYGL188C-A 141 nt-0.38□□□□□ -2.47
SUB1P54000 YJL077W-AYJL077W-A 87 nt-0.39□□□□□ -2.47
SUB1P54000 SEC10YLR166C 2616 nt-0.39□□□□□ -2.47
SUB1P54000 snR46snR46 197 nt-0.41□□□□□ -2.48
SUB1P54000 tQ(UUG)QtQ(UUG)Q 76 nt-0.43□□□□□ -2.48
SUB1P54000 YIL071W-AYIL071W-A 477 nt-0.43□□□□□ -2.48
SUB1P54000 URB1YKL014C 5295 nt-0.44□□□□□ -2.48
SUB1P54000 snR69snR69 101 nt-0.44□□□□□ -2.48
SUB1P54000 YML100W-AYML100W-A 174 nt-0.44□□□□□ -2.48
SUB1P54000 snR39BsnR39B 96 nt-0.44□□□□□ -2.48
SUB1P54000 YOR329W-AYOR329W-A 210 nt-0.46□□□□□ -2.48
SUB1P54000 snR80snR80 171 nt-0.47□□□□□ -2.48
SUB1P54000 YGR146C-AYGR146C-A 162 nt-0.47□□□□□ -2.48
SUB1P54000 YDL007C-AYDL007C-A 258 nt-0.49□□□□□ -2.49
SUB1P54000 snR52snR52 92 nt-0.5□□□□□ -2.49
SUB1P54000 PMP2YEL017C-A 132 nt-0.51□□□□□ -2.49
SUB1P54000 YNL067W-BYNL067W-B 141 nt-0.52□□□□□ -2.49
SUB1P54000 PAU9YBL108C-A 129 nt-0.52□□□□□ -2.49
SUB1P54000 tA(UGC)QtA(UGC)Q 76 nt-0.53□□□□□ -2.49
SUB1P54000 YJL113WYJL113W 4647 nt-0.54□□□□□ -2.5
SUB1P54000 RDS3YPR094W 324 nt-0.54□□□□□ -2.5
SUB1P54000 YLR342W-AYLR342W-A 174 nt-0.55□□□□□ -2.5
SUB1P54000 YER090C-AYER090C-A 90 nt-0.56□□□□□ -2.5
SUB1P54000 snR48snR48 113 nt-0.57□□□□□ -2.5
SUB1P54000 snR50snR50 90 nt-0.57□□□□□ -2.5
SUB1P54000 YNL266WYNL266W 420 nt-0.59□□□□□ -2.5
SUB1P54000 YHL009W-BYHL009W-B 5409 nt-0.6□□□□□ -2.51
SUB1P54000 tL(UAA)QtL(UAA)Q 85 nt-0.61□□□□□ -2.51
SUB1P54000 Q0142Q0142 177 nt-0.62□□□□□ -2.51
SUB1P54000 JLP2YMR132C 627 nt-0.63□□□□□ -2.51
SUB1P54000 tD(GUC)QtD(GUC)Q 75 nt-0.64□□□□□ -2.51
SUB1P54000 YNL205CYNL205C 423 nt-0.64□□□□□ -2.51
SUB1P54000 YHL015W-AYHL015W-A 84 nt-0.65□□□□□ -2.51
SUB1P54000 YBR178WYBR178W 375 nt-0.67□□□□□ -2.52
SUB1P54000 YDR406W-AYDR406W-A 246 nt-0.68□□□□□ -2.52
SUB1P54000 YLR286W-AYLR286W-A 135 nt-0.69□□□□□ -2.52
SUB1P54000 YOR102WYOR102W 351 nt-0.69□□□□□ -2.52
SUB1P54000 tT(UGU)G1tT(UGU)G1 72 nt-0.7□□□□□ -2.52
SUB1P54000 tT(UGU)G2tT(UGU)G2 72 nt-0.7□□□□□ -2.52
SUB1P54000 tT(UGU)PtT(UGU)P 72 nt-0.7□□□□□ -2.52
SUB1P54000 YDL159C-BYDL159C-B 177 nt-0.73□□□□□ -2.53
SUB1P54000 snR67snR67 82 nt-0.74□□□□□ -2.53
SUB1P54000 snR33snR33 183 nt-0.76□□□□□ -2.53
SUB1P54000 YNL198CYNL198C 303 nt-0.8□□□□□ -2.54
SUB1P54000 YJL150WYJL150W 303 nt-0.81□□□□□ -2.54
SUB1P54000 YBR196C-AYBR196C-A 150 nt-0.83□□□□□ -2.54
SUB1P54000 SKI7YOR076C 2244 nt-0.84□□□□□ -2.54
SUB1P54000 YLR299C-AYLR299C-A 93 nt-0.85□□□□□ -2.55
SUB1P54000 YBL053WYBL053W 375 nt-0.86□□□□□ -2.55
SUB1P54000 YMR046W-AYMR046W-A 129 nt-0.88□□□□□ -2.55
SUB1P54000 snR161snR161 161 nt-0.88□□□□□ -2.55
SUB1P54000 SPG3YDR504C 384 nt-0.94□□□□□ -2.56
SUB1P54000 SOM1YEL059C-A 225 nt-0.95□□□□□ -2.56
SUB1P54000 YBR223W-AYBR223W-A 120 nt-0.98□□□□□ -2.57
SUB1P54000 YML054C-AYML054C-A 159 nt-1□□□□□ -2.57
SUB1P54000 YCR095W-AYCR095W-A 159 nt-1.03□□□□□ -2.57
SUB1P54000 tM(CAU)Q1tM(CAU)Q1 76 nt-1.04□□□□□ -2.58
SUB1P54000 YHR180C-BYHR180C-B 105 nt-1.07□□□□□ -2.58
SUB1P54000 tP(UGG)QtP(UGG)Q 72 nt-1.1□□□□□ -2.59
SUB1P54000 YLR466C-BYLR466C-B 117 nt-1.15□□□□□ -2.59
SUB1P54000 YGR151CYGR151C 336 nt-1.17□□□□□ -2.6
SUB1P54000 YOR376W-AYOR376W-A 156 nt-1.21□□□□□ -2.6
SUB1P54000 YNR077CYNR077C 255 nt-1.23□□□□□ -2.61
SUB1P54000 YNL338WYNL338W 159 nt-1.24□□□□□ -2.61
SUB1P54000 YCL001W-BYCL001W-B 255 nt-1.24□□□□□ -2.61
SUB1P54000 YGR240C-AYGR240C-A 201 nt-1.25□□□□□ -2.61
SUB1P54000 CDC65tQ(CUG)M 72 nt-1.26□□□□□ -2.61
SUB1P54000 snR77snR77 88 nt-1.27□□□□□ -2.61
SUB1P54000 YOL083C-AYOL083C-A 141 nt-1.27□□□□□ -2.61
SUB1P54000 RPL41AYDL184C 78 nt-1.31□□□□□ -2.62
SUB1P54000 YKL106C-AYKL106C-A 120 nt-1.31□□□□□ -2.62
SUB1P54000 YBL071C-BYBL071C-B 99 nt-1.32□□□□□ -2.62
SUB1P54000 YBR109W-AYBR109W-A 225 nt-1.32□□□□□ -2.62
SUB1P54000 YBR296C-AYBR296C-A 120 nt-1.32□□□□□ -2.62
SUB1P54000 YOR316C-AYOR316C-A 210 nt-1.37□□□□□ -2.63
SUB1P54000 YOL164W-AYOL164W-A 183 nt-1.39□□□□□ -2.63
SUB1P54000 tY(GUA)QtY(GUA)Q 84 nt-1.41□□□□□ -2.64
SUB1P54000 YAL037C-AYAL037C-A 93 nt-1.41□□□□□ -2.64
SUB1P54000 YMR315W-AYMR315W-A 108 nt-1.41□□□□□ -2.64
SUB1P54000 snR38snR38 95 nt-1.43□□□□□ -2.64
SUB1P54000 YNL337WYNL337W 255 nt-1.44□□□□□ -2.64
SUB1P54000 snR81snR81 201 nt-1.46□□□□□ -2.64
SUB1P54000 snR47snR47 99 nt-1.46□□□□□ -2.64
SUB1P54000 YBL100W-CYBL100W-C 120 nt-1.5□□□□□ -2.65
SUB1P54000 Q0032Q0032 291 nt-1.52□□□□□ -2.65
SUB1P54000 YGL007C-AYGL007C-A 87 nt-1.59□□□□□ -2.66
SUB1P54000 tS(GCU)Q1tS(GCU)Q1 86 nt-1.67□□□□□ -2.68
SUB1P54000 YGL041C-BYGL041C-B 183 nt-1.71□□□□□ -2.68
SUB1P54000 YKL225WYKL225W 348 nt-1.71□□□□□ -2.68
SUB1P54000 YNL103W-AYNL103W-A 90 nt-1.74□□□□□ -2.69
SUB1P54000 YOR309CYOR309C 381 nt-1.74□□□□□ -2.69
SUB1P54000 YBR126W-BYBR126W-B 144 nt-1.75□□□□□ -2.69
SUB1P54000 snR61snR61 90 nt-1.78□□□□□ -2.69
SUB1P54000 YLR294CYLR294C 330 nt-1.83□□□□□ -2.7
SUB1P54000 YDR034C-AYDR034C-A 177 nt-1.85□□□□□ -2.71
SUB1P54000 snR6snR6 112 nt-1.87□□□□□ -2.71
SUB1P54000 YDL114W-AYDL114W-A 114 nt-1.89□□□□□ -2.71
SUB1P54000 YOR225WYOR225W 330 nt-1.89□□□□□ -2.71
SUB1P54000 YNL170WYNL170W 396 nt-1.91□□□□□ -2.72
SUB1P54000 snR62snR62 100 nt-1.92□□□□□ -2.72
Retrieved 100 of 7,029 protein–RNA pairs in 12.4 ms