Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.97■■□□□ 1.11
CLCN3P51790 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.97■■□□□ 1.11
CLCN3P51790 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CLCN3P51790 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CLCN3P51790 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CLCN3P51790 HTR7P1-201ENST00000538670 1336 ntBASIC21.97■■□□□ 1.11
CLCN3P51790 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CLCN3P51790 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CLCN3P51790 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CLCN3P51790 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CLCN3P51790 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CLCN3P51790 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLCN3P51790 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLCN3P51790 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLCN3P51790 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLCN3P51790 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
CLCN3P51790 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.96■■□□□ 1.11
CLCN3P51790 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLCN3P51790 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CLCN3P51790 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.96■■□□□ 1.11
CLCN3P51790 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.96■■□□□ 1.11
CLCN3P51790 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
CLCN3P51790 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.96■■□□□ 1.11
CLCN3P51790 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
CLCN3P51790 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLCN3P51790 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLCN3P51790 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.96■■□□□ 1.11
CLCN3P51790 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.96■■□□□ 1.11
CLCN3P51790 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLCN3P51790 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLCN3P51790 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLCN3P51790 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLCN3P51790 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CLCN3P51790 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
CLCN3P51790 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CLCN3P51790 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLCN3P51790 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.95■■□□□ 1.1
CLCN3P51790 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
CLCN3P51790 AP001412.1-201ENST00000608405 714 ntBASIC21.95■■□□□ 1.1
CLCN3P51790 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.95■■□□□ 1.1
CLCN3P51790 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
CLCN3P51790 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLCN3P51790 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLCN3P51790 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLCN3P51790 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLCN3P51790 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.94■■□□□ 1.1
CLCN3P51790 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLCN3P51790 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLCN3P51790 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
CLCN3P51790 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
CLCN3P51790 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.94■■□□□ 1.1
CLCN3P51790 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.94■■□□□ 1.1
CLCN3P51790 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLCN3P51790 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.94■■□□□ 1.1
CLCN3P51790 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
CLCN3P51790 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CLCN3P51790 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CLCN3P51790 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.93■■□□□ 1.1
CLCN3P51790 KRT16P6-202ENST00000425692 1426 ntBASIC21.93■■□□□ 1.1
CLCN3P51790 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.93■■□□□ 1.1
CLCN3P51790 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.93■■□□□ 1.1
CLCN3P51790 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.93■■□□□ 1.1
CLCN3P51790 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.93■■□□□ 1.1
CLCN3P51790 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.93■■□□□ 1.1
CLCN3P51790 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.93■■□□□ 1.1
CLCN3P51790 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLCN3P51790 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.92■■□□□ 1.1
CLCN3P51790 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLCN3P51790 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.92■■□□□ 1.1
CLCN3P51790 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLCN3P51790 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLCN3P51790 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CLCN3P51790 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLCN3P51790 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLCN3P51790 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.92■■□□□ 1.1
CLCN3P51790 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLCN3P51790 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CLCN3P51790 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.92■■□□□ 1.1
CLCN3P51790 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.92■■□□□ 1.1
CLCN3P51790 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.92■■□□□ 1.1
CLCN3P51790 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.92■■□□□ 1.1
CLCN3P51790 AF186192.3-201ENST00000583427 947 ntBASIC21.92■■□□□ 1.1
CLCN3P51790 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.92■■□□□ 1.1
CLCN3P51790 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
CLCN3P51790 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLCN3P51790 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CLCN3P51790 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.92■■□□□ 1.1
CLCN3P51790 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.92■■□□□ 1.1
CLCN3P51790 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLCN3P51790 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
CLCN3P51790 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.91■■□□□ 1.1
CLCN3P51790 PKD1P6-201ENST00000343738 4769 ntBASIC21.91■■□□□ 1.1
CLCN3P51790 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
CLCN3P51790 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
CLCN3P51790 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLCN3P51790 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLCN3P51790 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLCN3P51790 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLCN3P51790 TSPY15P-201ENST00000457163 923 ntBASIC21.91■■□□□ 1.1
CLCN3P51790 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms